miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6674 3' -57.7 NC_001847.1 + 2191 0.68 0.717926
Target:  5'- uGGGcGGCgUGCGgGCGCACCUCa--- -3'
miRNA:   3'- gCUC-CUGgACGUgUGCGUGGAGaccu -5'
6674 3' -57.7 NC_001847.1 + 3984 0.66 0.811752
Target:  5'- cCGGGGGCCggGCGCGCG-GCCcCgcgGGGc -3'
miRNA:   3'- -GCUCCUGGa-CGUGUGCgUGGaGa--CCU- -5'
6674 3' -57.7 NC_001847.1 + 12339 0.66 0.820387
Target:  5'- uCGAGGuCCUGCccgagucaGCGCcccaccggaGCCUgCUGGAg -3'
miRNA:   3'- -GCUCCuGGACGug------UGCG---------UGGA-GACCU- -5'
6674 3' -57.7 NC_001847.1 + 12552 0.67 0.772883
Target:  5'- gCGAGGACCuUGUgccagacgaggccuACGCGCACCUa--GAg -3'
miRNA:   3'- -GCUCCUGG-ACG--------------UGUGCGUGGAgacCU- -5'
6674 3' -57.7 NC_001847.1 + 13435 0.68 0.727787
Target:  5'- -cGGGGCCUGCGCugGCugUaUCUagcGGGc -3'
miRNA:   3'- gcUCCUGGACGUGugCGugG-AGA---CCU- -5'
6674 3' -57.7 NC_001847.1 + 14451 0.7 0.586274
Target:  5'- cCGGGGugCgcgGC-CGCG-GCCUCUGGGu -3'
miRNA:   3'- -GCUCCugGa--CGuGUGCgUGGAGACCU- -5'
6674 3' -57.7 NC_001847.1 + 21521 0.69 0.667708
Target:  5'- gCGGGGGCC-GCGCgggccaACGCGCCcaagCUGGc -3'
miRNA:   3'- -GCUCCUGGaCGUG------UGCGUGGa---GACCu -5'
6674 3' -57.7 NC_001847.1 + 22110 0.7 0.586274
Target:  5'- cCGGGGGCgacaGCGgGCGCGCC-CUGGGc -3'
miRNA:   3'- -GCUCCUGga--CGUgUGCGUGGaGACCU- -5'
6674 3' -57.7 NC_001847.1 + 26974 0.67 0.784909
Target:  5'- uGAGGugC-GCGCGCaGCGCgUCUGcGGc -3'
miRNA:   3'- gCUCCugGaCGUGUG-CGUGgAGAC-CU- -5'
6674 3' -57.7 NC_001847.1 + 27059 0.66 0.803842
Target:  5'- aGAGGcCCgcagccccccgggcgGCAC-CGCGCCcacgCUGGAg -3'
miRNA:   3'- gCUCCuGGa--------------CGUGuGCGUGGa---GACCU- -5'
6674 3' -57.7 NC_001847.1 + 27948 0.66 0.837139
Target:  5'- --uGGGCCgcgGCGCGCGCGCUcgcggUCgcggUGGAg -3'
miRNA:   3'- gcuCCUGGa--CGUGUGCGUGG-----AG----ACCU- -5'
6674 3' -57.7 NC_001847.1 + 28030 0.7 0.586274
Target:  5'- aCGAGcGCCUGCACACGCcagacgcggcGCUgCUGGc -3'
miRNA:   3'- -GCUCcUGGACGUGUGCG----------UGGaGACCu -5'
6674 3' -57.7 NC_001847.1 + 28419 0.67 0.775678
Target:  5'- gCGGGGcuuagcGCCcugGCGCACGCcGCCaaCUGGAa -3'
miRNA:   3'- -GCUCC------UGGa--CGUGUGCG-UGGa-GACCU- -5'
6674 3' -57.7 NC_001847.1 + 28481 0.74 0.389211
Target:  5'- gGAGGGCCcgcUGCugACGC-CUUCUGGc -3'
miRNA:   3'- gCUCCUGG---ACGugUGCGuGGAGACCu -5'
6674 3' -57.7 NC_001847.1 + 28697 0.66 0.816953
Target:  5'- gGuGGACCuggUGUACGCGCGCCgcgacgccauggcCUGGc -3'
miRNA:   3'- gCuCCUGG---ACGUGUGCGUGGa------------GACCu -5'
6674 3' -57.7 NC_001847.1 + 28762 0.68 0.717926
Target:  5'- --cGGACCUGCAgcugGCGCGCCUgCUGc- -3'
miRNA:   3'- gcuCCUGGACGUg---UGCGUGGA-GACcu -5'
6674 3' -57.7 NC_001847.1 + 32002 0.68 0.697995
Target:  5'- gCGAGGACCUuCGCGCGCcggcggcccGCgCUCgcgcggGGAa -3'
miRNA:   3'- -GCUCCUGGAcGUGUGCG---------UG-GAGa-----CCU- -5'
6674 3' -57.7 NC_001847.1 + 33792 0.69 0.637163
Target:  5'- uCGcGGGgCUGCGCGCgGCGCCcggcgcgCUGGAg -3'
miRNA:   3'- -GCuCCUgGACGUGUG-CGUGGa------GACCU- -5'
6674 3' -57.7 NC_001847.1 + 33859 0.69 0.637163
Target:  5'- aGAGGA-CUGCGCGCGCuuCUUgcaGGAg -3'
miRNA:   3'- gCUCCUgGACGUGUGCGugGAGa--CCU- -5'
6674 3' -57.7 NC_001847.1 + 34622 0.67 0.753975
Target:  5'- cCGAGGaaguccggcGCCUGCGCgccgaggccgagcgGCGCGCCgagGGGg -3'
miRNA:   3'- -GCUCC---------UGGACGUG--------------UGCGUGGagaCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.