miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6674 3' -57.7 NC_001847.1 + 117527 0.69 0.637163
Target:  5'- aCGGGGA-CUGCAUG-GUGCCUCUGGc -3'
miRNA:   3'- -GCUCCUgGACGUGUgCGUGGAGACCu -5'
6674 3' -57.7 NC_001847.1 + 28030 0.7 0.586274
Target:  5'- aCGAGcGCCUGCACACGCcagacgcggcGCUgCUGGc -3'
miRNA:   3'- -GCUCcUGGACGUGUGCG----------UGGaGACCu -5'
6674 3' -57.7 NC_001847.1 + 53383 0.7 0.586274
Target:  5'- gCGAGcGcGCCUGCcgaguuuuuuGCGCGCACCauggggCUGGAg -3'
miRNA:   3'- -GCUC-C-UGGACG----------UGUGCGUGGa-----GACCU- -5'
6674 3' -57.7 NC_001847.1 + 124923 0.7 0.586274
Target:  5'- cCGGGGGCgacaGCGgGCGCGCC-CUGGGc -3'
miRNA:   3'- -GCUCCUGga--CGUgUGCGUGGaGACCU- -5'
6674 3' -57.7 NC_001847.1 + 33859 0.69 0.637163
Target:  5'- aGAGGA-CUGCGCGCGCuuCUUgcaGGAg -3'
miRNA:   3'- gCUCCUgGACGUGUGCGugGAGa--CCU- -5'
6674 3' -57.7 NC_001847.1 + 36266 0.69 0.637163
Target:  5'- --uGGGCCgcccagGCGCACGCGCCcuUCcgGGAu -3'
miRNA:   3'- gcuCCUGGa-----CGUGUGCGUGG--AGa-CCU- -5'
6674 3' -57.7 NC_001847.1 + 90043 0.69 0.637163
Target:  5'- uCGAGGGCCUGUuCACGCAUgccguUUCgUGGu -3'
miRNA:   3'- -GCUCCUGGACGuGUGCGUG-----GAG-ACCu -5'
6674 3' -57.7 NC_001847.1 + 33792 0.69 0.637163
Target:  5'- uCGcGGGgCUGCGCGCgGCGCCcggcgcgCUGGAg -3'
miRNA:   3'- -GCuCCUgGACGUGUG-CGUGGa------GACCU- -5'
6674 3' -57.7 NC_001847.1 + 92922 0.69 0.637163
Target:  5'- uCGAGGACCgucacgGCGCcgGCGCAUCgCaGGAg -3'
miRNA:   3'- -GCUCCUGGa-----CGUG--UGCGUGGaGaCCU- -5'
6674 3' -57.7 NC_001847.1 + 88606 0.7 0.576167
Target:  5'- gGAGGACCU-CGCGCGCGCCg----- -3'
miRNA:   3'- gCUCCUGGAcGUGUGCGUGGagaccu -5'
6674 3' -57.7 NC_001847.1 + 59871 0.71 0.51657
Target:  5'- cCGAGGGCCgGCGCGCG-GCCUCcgcguUGGc -3'
miRNA:   3'- -GCUCCUGGaCGUGUGCgUGGAG-----ACCu -5'
6674 3' -57.7 NC_001847.1 + 74270 0.71 0.51657
Target:  5'- -uGGGGCCcGCGCGCGCGCUcgcgCUGGc -3'
miRNA:   3'- gcUCCUGGaCGUGUGCGUGGa---GACCu -5'
6674 3' -57.7 NC_001847.1 + 34703 0.76 0.277652
Target:  5'- gCGAGGACUUGCGCGC-CGCg-CUGGAg -3'
miRNA:   3'- -GCUCCUGGACGUGUGcGUGgaGACCU- -5'
6674 3' -57.7 NC_001847.1 + 118207 0.74 0.356766
Target:  5'- aCGAGGcCCUGCgaaACGCAUCgCUGGAg -3'
miRNA:   3'- -GCUCCuGGACGug-UGCGUGGaGACCU- -5'
6674 3' -57.7 NC_001847.1 + 55035 0.74 0.364697
Target:  5'- aCGuGGGCCUGCuCcCGCACCUCaaGGAg -3'
miRNA:   3'- -GCuCCUGGACGuGuGCGUGGAGa-CCU- -5'
6674 3' -57.7 NC_001847.1 + 131294 0.74 0.389211
Target:  5'- gGAGGGCCcgcUGCugACGC-CUUCUGGc -3'
miRNA:   3'- gCUCCUGG---ACGugUGCGuGGAGACCu -5'
6674 3' -57.7 NC_001847.1 + 56148 0.73 0.414781
Target:  5'- gCGGGGcucuACC-GCACGgGCACCUCUGuGAa -3'
miRNA:   3'- -GCUCC----UGGaCGUGUgCGUGGAGAC-CU- -5'
6674 3' -57.7 NC_001847.1 + 78397 0.73 0.431499
Target:  5'- cCGAGGACCccgccgcUGCGgGCGCGCUgCUGGc -3'
miRNA:   3'- -GCUCCUGG-------ACGUgUGCGUGGaGACCu -5'
6674 3' -57.7 NC_001847.1 + 36473 0.72 0.475417
Target:  5'- -cGGGACCUGCACcuGCGCGggcgcguggcggccCUUCUGGGc -3'
miRNA:   3'- gcUCCUGGACGUG--UGCGU--------------GGAGACCU- -5'
6674 3' -57.7 NC_001847.1 + 84824 0.71 0.512678
Target:  5'- cCGGGGGCCUGCGUGCGCACaaccccccgcagCUGGu -3'
miRNA:   3'- -GCUCCUGGACGUGUGCGUGga----------GACCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.