miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6674 3' -57.7 NC_001847.1 + 133367 0.66 0.837139
Target:  5'- -cGGGACCUGCgugGCGgGCCUCaucgaugcccUGGAc -3'
miRNA:   3'- gcUCCUGGACGug-UGCgUGGAG----------ACCU- -5'
6674 3' -57.7 NC_001847.1 + 87009 0.68 0.727787
Target:  5'- cCGGcGGuuACCUGgGC-CGCGCCUCgcgGGAc -3'
miRNA:   3'- -GCU-CC--UGGACgUGuGCGUGGAGa--CCU- -5'
6674 3' -57.7 NC_001847.1 + 28762 0.68 0.717926
Target:  5'- --cGGACCUGCAgcugGCGCGCCUgCUGc- -3'
miRNA:   3'- gcuCCUGGACGUg---UGCGUGGA-GACcu -5'
6674 3' -57.7 NC_001847.1 + 110856 0.85 0.076032
Target:  5'- -cAGGGCCUGCACACGCuCCUCUuGGAg -3'
miRNA:   3'- gcUCCUGGACGUGUGCGuGGAGA-CCU- -5'
6674 3' -57.7 NC_001847.1 + 108797 0.66 0.828013
Target:  5'- cCGGGaGAgCUGCAuguacgccgccuuCGCGCGCCUggGGAc -3'
miRNA:   3'- -GCUC-CUgGACGU-------------GUGCGUGGAgaCCU- -5'
6674 3' -57.7 NC_001847.1 + 53936 0.66 0.820387
Target:  5'- cCGA--GCCUGCaucuacGCGCGCGCCggCUGGc -3'
miRNA:   3'- -GCUccUGGACG------UGUGCGUGGa-GACCu -5'
6674 3' -57.7 NC_001847.1 + 28697 0.66 0.816953
Target:  5'- gGuGGACCuggUGUACGCGCGCCgcgacgccauggcCUGGc -3'
miRNA:   3'- gCuCCUGG---ACGUGUGCGUGGa------------GACCu -5'
6674 3' -57.7 NC_001847.1 + 3984 0.66 0.811752
Target:  5'- cCGGGGGCCggGCGCGCG-GCCcCgcgGGGc -3'
miRNA:   3'- -GCUCCUGGa-CGUGUGCgUGGaGa--CCU- -5'
6674 3' -57.7 NC_001847.1 + 128451 0.67 0.775678
Target:  5'- --cGGcCCUGCGCGCGCGCCcggCcGGc -3'
miRNA:   3'- gcuCCuGGACGUGUGCGUGGa--GaCCu -5'
6674 3' -57.7 NC_001847.1 + 97459 0.68 0.727787
Target:  5'- aCGAGGuCCaGCGCGuugacggucUGCACCUCgcUGGGc -3'
miRNA:   3'- -GCUCCuGGaCGUGU---------GCGUGGAG--ACCU- -5'
6674 3' -57.7 NC_001847.1 + 64343 0.67 0.766318
Target:  5'- gCGuGG-CCUgGUACACGCGCUUCUcuaGGGc -3'
miRNA:   3'- -GCuCCuGGA-CGUGUGCGUGGAGA---CCU- -5'
6674 3' -57.7 NC_001847.1 + 91535 0.66 0.794005
Target:  5'- uGAGGGCCgugGCcaGCACcggccccaGCGCCacgCUGGGg -3'
miRNA:   3'- gCUCCUGGa--CG--UGUG--------CGUGGa--GACCU- -5'
6674 3' -57.7 NC_001847.1 + 27948 0.66 0.837139
Target:  5'- --uGGGCCgcgGCGCGCGCGCUcgcggUCgcggUGGAg -3'
miRNA:   3'- gcuCCUGGa--CGUGUGCGUGG-----AG----ACCU- -5'
6674 3' -57.7 NC_001847.1 + 57415 0.67 0.75684
Target:  5'- gGGcGGGCCUcGCACGCGCGCCa----- -3'
miRNA:   3'- gCU-CCUGGA-CGUGUGCGUGGagaccu -5'
6674 3' -57.7 NC_001847.1 + 130851 0.66 0.828852
Target:  5'- gCGAGuACCaagGCgccgGCGCGCGCCUCgUGGc -3'
miRNA:   3'- -GCUCcUGGa--CG----UGUGCGUGGAG-ACCu -5'
6674 3' -57.7 NC_001847.1 + 127031 0.66 0.811752
Target:  5'- uGGGGccccgcGCCUGCGCugGCGCCg----- -3'
miRNA:   3'- gCUCC------UGGACGUGugCGUGGagaccu -5'
6674 3' -57.7 NC_001847.1 + 109533 0.67 0.755887
Target:  5'- uCGuGcACUUGCGCgugcgugcucggaGCGUGCCUCUGGAc -3'
miRNA:   3'- -GCuCcUGGACGUG-------------UGCGUGGAGACCU- -5'
6674 3' -57.7 NC_001847.1 + 53802 0.68 0.727787
Target:  5'- gCGAGGAggUCUGCGCccccugGCGCGCCggagCgGGGg -3'
miRNA:   3'- -GCUCCU--GGACGUG------UGCGUGGa---GaCCU- -5'
6674 3' -57.7 NC_001847.1 + 110703 0.66 0.828852
Target:  5'- uGAGGGCg-GCGCGCuCGCCUUUGa- -3'
miRNA:   3'- gCUCCUGgaCGUGUGcGUGGAGACcu -5'
6674 3' -57.7 NC_001847.1 + 67729 0.66 0.820387
Target:  5'- uGAGccuGGCCUcucgGCACACGCGCCggcgCauugUGGAg -3'
miRNA:   3'- gCUC---CUGGA----CGUGUGCGUGGa---G----ACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.