miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6674 3' -57.7 NC_001847.1 + 131510 0.66 0.816953
Target:  5'- gGuGGACCuggUGUACGCGCGCCgcgacgccauggcCUGGc -3'
miRNA:   3'- gCuCCUGG---ACGUGUGCGUGGa------------GACCu -5'
6674 3' -57.7 NC_001847.1 + 133367 0.66 0.837139
Target:  5'- -cGGGACCUGCgugGCGgGCCUCaucgaugcccUGGAc -3'
miRNA:   3'- gcUCCUGGACGug-UGCgUGGAG----------ACCU- -5'
6674 3' -57.7 NC_001847.1 + 71785 0.66 0.828852
Target:  5'- aCGAGuACacagUGcCGCACGCGCCcCUGGGc -3'
miRNA:   3'- -GCUCcUGg---AC-GUGUGCGUGGaGACCU- -5'
6674 3' -57.7 NC_001847.1 + 108797 0.66 0.828013
Target:  5'- cCGGGaGAgCUGCAuguacgccgccuuCGCGCGCCUggGGAc -3'
miRNA:   3'- -GCUC-CUgGACGU-------------GUGCGUGGAgaCCU- -5'
6674 3' -57.7 NC_001847.1 + 53936 0.66 0.820387
Target:  5'- cCGA--GCCUGCaucuacGCGCGCGCCggCUGGc -3'
miRNA:   3'- -GCUccUGGACG------UGUGCGUGGa-GACCu -5'
6674 3' -57.7 NC_001847.1 + 130761 0.66 0.837139
Target:  5'- --uGGGCCgcgGCGCGCGCGCUcgcggUCgcggUGGAg -3'
miRNA:   3'- gcuCCUGGa--CGUGUGCGUGG-----AG----ACCU- -5'
6674 3' -57.7 NC_001847.1 + 27948 0.66 0.837139
Target:  5'- --uGGGCCgcgGCGCGCGCGCUcgcggUCgcggUGGAg -3'
miRNA:   3'- gcuCCUGGa--CGUGUGCGUGG-----AG----ACCU- -5'
6674 3' -57.7 NC_001847.1 + 52549 0.66 0.837139
Target:  5'- gGAGGGCgCgGCcgACAUGCugCgagagCUGGAg -3'
miRNA:   3'- gCUCCUG-GaCG--UGUGCGugGa----GACCU- -5'
6674 3' -57.7 NC_001847.1 + 28697 0.66 0.816953
Target:  5'- gGuGGACCuggUGUACGCGCGCCgcgacgccauggcCUGGc -3'
miRNA:   3'- gCuCCUGG---ACGUGUGCGUGGa------------GACCu -5'
6674 3' -57.7 NC_001847.1 + 101211 0.66 0.828852
Target:  5'- cCGGcGGGCCUGCACACGgggaggcccaGCCUCcccGAg -3'
miRNA:   3'- -GCU-CCUGGACGUGUGCg---------UGGAGac-CU- -5'
6674 3' -57.7 NC_001847.1 + 130851 0.66 0.828852
Target:  5'- gCGAGuACCaagGCgccgGCGCGCGCCUCgUGGc -3'
miRNA:   3'- -GCUCcUGGa--CG----UGUGCGUGGAG-ACCu -5'
6674 3' -57.7 NC_001847.1 + 67729 0.66 0.820387
Target:  5'- uGAGccuGGCCUcucgGCACACGCGCCggcgCauugUGGAg -3'
miRNA:   3'- gCUC---CUGGA----CGUGUGCGUGGa---G----ACCU- -5'
6674 3' -57.7 NC_001847.1 + 27059 0.66 0.803842
Target:  5'- aGAGGcCCgcagccccccgggcgGCAC-CGCGCCcacgCUGGAg -3'
miRNA:   3'- gCUCCuGGa--------------CGUGuGCGUGGa---GACCU- -5'
6674 3' -57.7 NC_001847.1 + 123792 0.66 0.815226
Target:  5'- -cGGGGCCUGCgcggcggcggcagcgGCAgGCGCCgucCUGGc -3'
miRNA:   3'- gcUCCUGGACG---------------UGUgCGUGGa--GACCu -5'
6674 3' -57.7 NC_001847.1 + 37432 0.66 0.828852
Target:  5'- cCGGGcGACUUGCugGCGgCGCUg-UGGAc -3'
miRNA:   3'- -GCUC-CUGGACGugUGC-GUGGagACCU- -5'
6674 3' -57.7 NC_001847.1 + 42074 0.66 0.820387
Target:  5'- gCGGGGGCCUaCGCGuCGUGCagaaUCUGGu -3'
miRNA:   3'- -GCUCCUGGAcGUGU-GCGUGg---AGACCu -5'
6674 3' -57.7 NC_001847.1 + 12339 0.66 0.820387
Target:  5'- uCGAGGuCCUGCccgagucaGCGCcccaccggaGCCUgCUGGAg -3'
miRNA:   3'- -GCUCCuGGACGug------UGCG---------UGGA-GACCU- -5'
6674 3' -57.7 NC_001847.1 + 82712 0.66 0.802067
Target:  5'- gCGAagcGGGCCcGCuucgagcucgacaGCGCGCGCCgcccgcgCUGGAg -3'
miRNA:   3'- -GCU---CCUGGaCG-------------UGUGCGUGGa------GACCU- -5'
6674 3' -57.7 NC_001847.1 + 97299 0.66 0.820387
Target:  5'- -cGGGACCgcgGgGCGCGUGCCUCcguccgaGGAg -3'
miRNA:   3'- gcUCCUGGa--CgUGUGCGUGGAGa------CCU- -5'
6674 3' -57.7 NC_001847.1 + 110703 0.66 0.828852
Target:  5'- uGAGGGCg-GCGCGCuCGCCUUUGa- -3'
miRNA:   3'- gCUCCUGgaCGUGUGcGUGGAGACcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.