miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6674 3' -57.7 NC_001847.1 + 133367 0.66 0.837139
Target:  5'- -cGGGACCUGCgugGCGgGCCUCaucgaugcccUGGAc -3'
miRNA:   3'- gcUCCUGGACGug-UGCgUGGAG----------ACCU- -5'
6674 3' -57.7 NC_001847.1 + 132889 0.68 0.677844
Target:  5'- cCGAGGGCC-GC-CGCGuCACCUg-GGAg -3'
miRNA:   3'- -GCUCCUGGaCGuGUGC-GUGGAgaCCU- -5'
6674 3' -57.7 NC_001847.1 + 131575 0.68 0.717926
Target:  5'- --cGGACCUGCAgcugGCGCGCCUgCUGc- -3'
miRNA:   3'- gcuCCUGGACGUg---UGCGUGGA-GACcu -5'
6674 3' -57.7 NC_001847.1 + 131510 0.66 0.816953
Target:  5'- gGuGGACCuggUGUACGCGCGCCgcgacgccauggcCUGGc -3'
miRNA:   3'- gCuCCUGG---ACGUGUGCGUGGa------------GACCu -5'
6674 3' -57.7 NC_001847.1 + 131294 0.74 0.389211
Target:  5'- gGAGGGCCcgcUGCugACGC-CUUCUGGc -3'
miRNA:   3'- gCUCCUGG---ACGugUGCGuGGAGACCu -5'
6674 3' -57.7 NC_001847.1 + 130851 0.66 0.828852
Target:  5'- gCGAGuACCaagGCgccgGCGCGCGCCUCgUGGc -3'
miRNA:   3'- -GCUCcUGGa--CG----UGUGCGUGGAG-ACCu -5'
6674 3' -57.7 NC_001847.1 + 130761 0.66 0.837139
Target:  5'- --uGGGCCgcgGCGCGCGCGCUcgcggUCgcggUGGAg -3'
miRNA:   3'- gcuCCUGGa--CGUGUGCGUGG-----AG----ACCU- -5'
6674 3' -57.7 NC_001847.1 + 129029 0.68 0.697995
Target:  5'- gCGAGGcGCUcGCGC-CGCGCCUCgcgGGc -3'
miRNA:   3'- -GCUCC-UGGaCGUGuGCGUGGAGa--CCu -5'
6674 3' -57.7 NC_001847.1 + 128451 0.67 0.775678
Target:  5'- --cGGcCCUGCGCGCGCGCCcggCcGGc -3'
miRNA:   3'- gcuCCuGGACGUGUGCGUGGa--GaCCu -5'
6674 3' -57.7 NC_001847.1 + 127031 0.66 0.811752
Target:  5'- uGGGGccccgcGCCUGCGCugGCGCCg----- -3'
miRNA:   3'- gCUCC------UGGACGUGugCGUGGagaccu -5'
6674 3' -57.7 NC_001847.1 + 126481 0.71 0.556079
Target:  5'- uCGGGGAUCuUGCGCGC-CAUCgUCUGGGc -3'
miRNA:   3'- -GCUCCUGG-ACGUGUGcGUGG-AGACCU- -5'
6674 3' -57.7 NC_001847.1 + 124923 0.7 0.586274
Target:  5'- cCGGGGGCgacaGCGgGCGCGCC-CUGGGc -3'
miRNA:   3'- -GCUCCUGga--CGUgUGCGUGGaGACCU- -5'
6674 3' -57.7 NC_001847.1 + 123792 0.66 0.815226
Target:  5'- -cGGGGCCUGCgcggcggcggcagcgGCAgGCGCCgucCUGGc -3'
miRNA:   3'- gcUCCUGGACG---------------UGUgCGUGGa--GACCu -5'
6674 3' -57.7 NC_001847.1 + 123743 0.73 0.43239
Target:  5'- aCGGGGGCCga-ACAUG-GCCUCUGGAg -3'
miRNA:   3'- -GCUCCUGGacgUGUGCgUGGAGACCU- -5'
6674 3' -57.7 NC_001847.1 + 118207 0.74 0.356766
Target:  5'- aCGAGGcCCUGCgaaACGCAUCgCUGGAg -3'
miRNA:   3'- -GCUCCuGGACGug-UGCGUGGaGACCU- -5'
6674 3' -57.7 NC_001847.1 + 117706 0.7 0.616765
Target:  5'- cCGAGGGCgUGUACACuugGCGCCgcgacaUGGGc -3'
miRNA:   3'- -GCUCCUGgACGUGUG---CGUGGag----ACCU- -5'
6674 3' -57.7 NC_001847.1 + 117527 0.69 0.637163
Target:  5'- aCGGGGA-CUGCAUG-GUGCCUCUGGc -3'
miRNA:   3'- -GCUCCUgGACGUGUgCGUGGAGACCu -5'
6674 3' -57.7 NC_001847.1 + 116392 1.09 0.00177
Target:  5'- gCGAGGACCUGCACACGCACCUCUGGAg -3'
miRNA:   3'- -GCUCCUGGACGUGUGCGUGGAGACCU- -5'
6674 3' -57.7 NC_001847.1 + 110856 0.85 0.076032
Target:  5'- -cAGGGCCUGCACACGCuCCUCUuGGAg -3'
miRNA:   3'- gcUCCUGGACGUGUGCGuGGAGA-CCU- -5'
6674 3' -57.7 NC_001847.1 + 110703 0.66 0.828852
Target:  5'- uGAGGGCg-GCGCGCuCGCCUUUGa- -3'
miRNA:   3'- gCUCCUGgaCGUGUGcGUGGAGACcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.