miRNA display CGI


Results 41 - 60 of 501 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 3' -55.8 NC_001847.1 + 101505 0.66 0.8919
Target:  5'- cGCCGGCUG-CaCCGCGgguguuugucgACcUCuAGUGCu -3'
miRNA:   3'- -UGGCCGACuG-GGCGU-----------UGaAGuUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 78688 0.66 0.8919
Target:  5'- cGCgGGCgcugGugCCggGCAGCacgCGAGUGCg -3'
miRNA:   3'- -UGgCCGa---CugGG--CGUUGaa-GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 62805 0.66 0.8919
Target:  5'- -aCGGCUu-CCUGCAGCacCAgcAGCGCg -3'
miRNA:   3'- ugGCCGAcuGGGCGUUGaaGU--UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 60735 0.66 0.8919
Target:  5'- gUCGGC-GGCCCGCGcgcgcGCggCGGccGCGCg -3'
miRNA:   3'- uGGCCGaCUGGGCGU-----UGaaGUU--CGCG- -5'
6675 3' -55.8 NC_001847.1 + 44638 0.66 0.8919
Target:  5'- cGCCaGCU--CCUGCAGCa-CAGGCGCc -3'
miRNA:   3'- -UGGcCGAcuGGGCGUUGaaGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 112338 0.66 0.8919
Target:  5'- gGCCGccGCcGGCCCGCAuCUaCGAGCu- -3'
miRNA:   3'- -UGGC--CGaCUGGGCGUuGAaGUUCGcg -5'
6675 3' -55.8 NC_001847.1 + 10167 0.66 0.8919
Target:  5'- aGCaGGCcGGCCCGCugcgccGGCUUUu-GCGCg -3'
miRNA:   3'- -UGgCCGaCUGGGCG------UUGAAGuuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 103281 0.66 0.8919
Target:  5'- cGCCGGCaGcaacGCCgGCGAgccCGGGCGCg -3'
miRNA:   3'- -UGGCCGaC----UGGgCGUUgaaGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 26295 0.66 0.8919
Target:  5'- -gCGGCaagUGACUCGCGGCgagUCGuggggcAGCGUc -3'
miRNA:   3'- ugGCCG---ACUGGGCGUUGa--AGU------UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 95988 0.66 0.8919
Target:  5'- -gCGGCUGcgcgGCCgGCAGCgauuUUCGagccccAGCGCg -3'
miRNA:   3'- ugGCCGAC----UGGgCGUUG----AAGU------UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 10561 0.66 0.891221
Target:  5'- gGCCGGCgccgGGCCCggcgccgGCGGCccccccgCGcGCGCg -3'
miRNA:   3'- -UGGCCGa---CUGGG-------CGUUGaa-----GUuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 113374 0.66 0.891221
Target:  5'- gGCCGGCgccgGGCCCggcgccgGCGGCccccccgCGcGCGCg -3'
miRNA:   3'- -UGGCCGa---CUGGG-------CGUUGaa-----GUuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 59113 0.66 0.889857
Target:  5'- cACCGGCaaGGCCaGCAcgaGCUUCcucuacaaccucaaGGGCGCc -3'
miRNA:   3'- -UGGCCGa-CUGGgCGU---UGAAG--------------UUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 132856 0.66 0.885011
Target:  5'- cCCGGC-GGCCCcgccgccgacgGCGGCUUCcgccGCGUg -3'
miRNA:   3'- uGGCCGaCUGGG-----------CGUUGAAGuu--CGCG- -5'
6675 3' -55.8 NC_001847.1 + 80272 0.66 0.885011
Target:  5'- uGCCGGUauuuaACCCG--GCUUCGGcGCGCg -3'
miRNA:   3'- -UGGCCGac---UGGGCguUGAAGUU-CGCG- -5'
6675 3' -55.8 NC_001847.1 + 78516 0.66 0.885011
Target:  5'- gGCCGGCUGcUCgCGCGGCUggugUCGccggaAGaCGCg -3'
miRNA:   3'- -UGGCCGACuGG-GCGUUGA----AGU-----UC-GCG- -5'
6675 3' -55.8 NC_001847.1 + 29447 0.66 0.885011
Target:  5'- gGCgUGGCgccGCCCGCGGCcg-AAGCGCc -3'
miRNA:   3'- -UG-GCCGac-UGGGCGUUGaagUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 24999 0.66 0.885011
Target:  5'- -aUGGCcaUGGCCaucgaguccaGCAGCUUCA-GCGCc -3'
miRNA:   3'- ugGCCG--ACUGGg---------CGUUGAAGUuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 33580 0.66 0.885011
Target:  5'- gGCCGuGCgcgGugCCGaCGACgUCcuGCGCc -3'
miRNA:   3'- -UGGC-CGa--CugGGC-GUUGaAGuuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 35719 0.66 0.885011
Target:  5'- cGCCGGagcugGACguggCCGCGguggagugGCUgcagCAAGCGCg -3'
miRNA:   3'- -UGGCCga---CUG----GGCGU--------UGAa---GUUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.