miRNA display CGI


Results 21 - 40 of 501 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 3' -55.8 NC_001847.1 + 109945 0.66 0.898555
Target:  5'- uGCCGGuCUuGCCCcCucccCUUCGGGCGUg -3'
miRNA:   3'- -UGGCC-GAcUGGGcGuu--GAAGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 53363 0.66 0.898555
Target:  5'- uGCUGGC-GGCCgCGgGcACcgCGAGCGCg -3'
miRNA:   3'- -UGGCCGaCUGG-GCgU-UGaaGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 28381 0.66 0.8979
Target:  5'- cGCCGGa-GACggcgccccccccgCCGCGGCgccagcgCGGGCGCg -3'
miRNA:   3'- -UGGCCgaCUG-------------GGCGUUGaa-----GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 83715 0.66 0.8979
Target:  5'- -gUGGCUauuuaacGAgCCCGCcGCUcacUCGGGCGCu -3'
miRNA:   3'- ugGCCGA-------CU-GGGCGuUGA---AGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 131194 0.66 0.8979
Target:  5'- cGCCGGa-GACggcgccccccccgCCGCGGCgccagcgCGGGCGCg -3'
miRNA:   3'- -UGGCCgaCUG-------------GGCGUUGaa-----GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 120317 0.66 0.896583
Target:  5'- gGCCGGCUGAuuuuCCUGgAACacCAgcucccggccgggcGGCGCu -3'
miRNA:   3'- -UGGCCGACU----GGGCgUUGaaGU--------------UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 17590 0.66 0.89459
Target:  5'- cACgGGCggGGCCCGCGGaaagggguuGCGCa -3'
miRNA:   3'- -UGgCCGa-CUGGGCGUUgaaguu---CGCG- -5'
6675 3' -55.8 NC_001847.1 + 96932 0.66 0.8919
Target:  5'- cGCgCGGCccgGGCcuCCGCgGGCggCAGGCGCu -3'
miRNA:   3'- -UG-GCCGa--CUG--GGCG-UUGaaGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 78688 0.66 0.8919
Target:  5'- cGCgGGCgcugGugCCggGCAGCacgCGAGUGCg -3'
miRNA:   3'- -UGgCCGa---CugGG--CGUUGaa-GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 5707 0.66 0.8919
Target:  5'- aGCCGcUUGGacacCCCGCAGCaggCGGGCGUc -3'
miRNA:   3'- -UGGCcGACU----GGGCGUUGaa-GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 26295 0.66 0.8919
Target:  5'- -gCGGCaagUGACUCGCGGCgagUCGuggggcAGCGUc -3'
miRNA:   3'- ugGCCG---ACUGGGCGUUGa--AGU------UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 112980 0.66 0.8919
Target:  5'- aGCaGGCcGGCCCGCugcgccGGCUUUu-GCGCg -3'
miRNA:   3'- -UGgCCGaCUGGGCG------UUGAAGuuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 60604 0.66 0.8919
Target:  5'- cGCUGGC-GACgUuaAACUgacUCAAGCGCc -3'
miRNA:   3'- -UGGCCGaCUGgGcgUUGA---AGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 36088 0.66 0.8919
Target:  5'- cGCgCGGCUGGCggagCGCGGCgacgCGcugGGCGCc -3'
miRNA:   3'- -UG-GCCGACUGg---GCGUUGaa--GU---UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 30060 0.66 0.8919
Target:  5'- uGCCGGCgcgGuggCGCGGCUggGAGUGCu -3'
miRNA:   3'- -UGGCCGa--CuggGCGUUGAagUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 30766 0.66 0.8919
Target:  5'- gGCCcGCUGcagcGCCgCGCGuCUgCGGGCGCg -3'
miRNA:   3'- -UGGcCGAC----UGG-GCGUuGAaGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 101505 0.66 0.8919
Target:  5'- cGCCGGCUG-CaCCGCGgguguuugucgACcUCuAGUGCu -3'
miRNA:   3'- -UGGCCGACuG-GGCGU-----------UGaAGuUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 81618 0.66 0.8919
Target:  5'- cGCCGGCgUGGCCguaaagaccuuUGCGagugccgccgACUUCGAGCa- -3'
miRNA:   3'- -UGGCCG-ACUGG-----------GCGU----------UGAAGUUCGcg -5'
6675 3' -55.8 NC_001847.1 + 46405 0.66 0.8919
Target:  5'- -aUGGC-GGCCUGCuGCUuaUCGAGCaGCa -3'
miRNA:   3'- ugGCCGaCUGGGCGuUGA--AGUUCG-CG- -5'
6675 3' -55.8 NC_001847.1 + 42692 0.66 0.8919
Target:  5'- gACCGGCccugcgccgUGugUCGCAcgauugauGCUUaccGGCGCg -3'
miRNA:   3'- -UGGCCG---------ACugGGCGU--------UGAAgu-UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.