Results 21 - 40 of 501 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6675 | 3' | -55.8 | NC_001847.1 | + | 70448 | 0.66 | 0.898555 |
Target: 5'- uGCCGcGcCUGACgcaCUGCGACacgcgCGGGCGCc -3' miRNA: 3'- -UGGC-C-GACUG---GGCGUUGaa---GUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 15577 | 0.66 | 0.898555 |
Target: 5'- gGCCGccGCUG-CCCGCAGagUCuggccGCGCg -3' miRNA: 3'- -UGGC--CGACuGGGCGUUgaAGuu---CGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 131194 | 0.66 | 0.8979 |
Target: 5'- cGCCGGa-GACggcgccccccccgCCGCGGCgccagcgCGGGCGCg -3' miRNA: 3'- -UGGCCgaCUG-------------GGCGUUGaa-----GUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 28381 | 0.66 | 0.8979 |
Target: 5'- cGCCGGa-GACggcgccccccccgCCGCGGCgccagcgCGGGCGCg -3' miRNA: 3'- -UGGCCgaCUG-------------GGCGUUGaa-----GUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 83715 | 0.66 | 0.8979 |
Target: 5'- -gUGGCUauuuaacGAgCCCGCcGCUcacUCGGGCGCu -3' miRNA: 3'- ugGCCGA-------CU-GGGCGuUGA---AGUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 120317 | 0.66 | 0.896583 |
Target: 5'- gGCCGGCUGAuuuuCCUGgAACacCAgcucccggccgggcGGCGCu -3' miRNA: 3'- -UGGCCGACU----GGGCgUUGaaGU--------------UCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 17590 | 0.66 | 0.89459 |
Target: 5'- cACgGGCggGGCCCGCGGaaagggguuGCGCa -3' miRNA: 3'- -UGgCCGa-CUGGGCGUUgaaguu---CGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 26295 | 0.66 | 0.8919 |
Target: 5'- -gCGGCaagUGACUCGCGGCgagUCGuggggcAGCGUc -3' miRNA: 3'- ugGCCG---ACUGGGCGUUGa--AGU------UCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 96932 | 0.66 | 0.8919 |
Target: 5'- cGCgCGGCccgGGCcuCCGCgGGCggCAGGCGCu -3' miRNA: 3'- -UG-GCCGa--CUG--GGCG-UUGaaGUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 42692 | 0.66 | 0.8919 |
Target: 5'- gACCGGCccugcgccgUGugUCGCAcgauugauGCUUaccGGCGCg -3' miRNA: 3'- -UGGCCG---------ACugGGCGU--------UGAAgu-UCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 46405 | 0.66 | 0.8919 |
Target: 5'- -aUGGC-GGCCUGCuGCUuaUCGAGCaGCa -3' miRNA: 3'- ugGCCGaCUGGGCGuUGA--AGUUCG-CG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 81618 | 0.66 | 0.8919 |
Target: 5'- cGCCGGCgUGGCCguaaagaccuuUGCGagugccgccgACUUCGAGCa- -3' miRNA: 3'- -UGGCCG-ACUGG-----------GCGU----------UGAAGUUCGcg -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 30060 | 0.66 | 0.8919 |
Target: 5'- uGCCGGCgcgGuggCGCGGCUggGAGUGCu -3' miRNA: 3'- -UGGCCGa--CuggGCGUUGAagUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 36088 | 0.66 | 0.8919 |
Target: 5'- cGCgCGGCUGGCggagCGCGGCgacgCGcugGGCGCc -3' miRNA: 3'- -UG-GCCGACUGg---GCGUUGaa--GU---UCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 60604 | 0.66 | 0.8919 |
Target: 5'- cGCUGGC-GACgUuaAACUgacUCAAGCGCc -3' miRNA: 3'- -UGGCCGaCUGgGcgUUGA---AGUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 78688 | 0.66 | 0.8919 |
Target: 5'- cGCgGGCgcugGugCCggGCAGCacgCGAGUGCg -3' miRNA: 3'- -UGgCCGa---CugGG--CGUUGaa-GUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 101505 | 0.66 | 0.8919 |
Target: 5'- cGCCGGCUG-CaCCGCGgguguuugucgACcUCuAGUGCu -3' miRNA: 3'- -UGGCCGACuG-GGCGU-----------UGaAGuUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 30766 | 0.66 | 0.8919 |
Target: 5'- gGCCcGCUGcagcGCCgCGCGuCUgCGGGCGCg -3' miRNA: 3'- -UGGcCGAC----UGG-GCGUuGAaGUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 112980 | 0.66 | 0.8919 |
Target: 5'- aGCaGGCcGGCCCGCugcgccGGCUUUu-GCGCg -3' miRNA: 3'- -UGgCCGaCUGGGCG------UUGAAGuuCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 5707 | 0.66 | 0.8919 |
Target: 5'- aGCCGcUUGGacacCCCGCAGCaggCGGGCGUc -3' miRNA: 3'- -UGGCcGACU----GGGCGUUGaa-GUUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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