Results 21 - 40 of 501 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6675 | 3' | -55.8 | NC_001847.1 | + | 107914 | 0.76 | 0.344473 |
Target: 5'- -aCGGaCUuuugcGACCCGCAGC-UCGAGCGCc -3' miRNA: 3'- ugGCC-GA-----CUGGGCGUUGaAGUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 71478 | 0.76 | 0.360319 |
Target: 5'- cACCGGCUGAgCCCgGCAACgguggcggCGGuGCGCg -3' miRNA: 3'- -UGGCCGACU-GGG-CGUUGaa------GUU-CGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 87016 | 0.75 | 0.393507 |
Target: 5'- -gCGGCUGGCCCGCGACUUUcucgGAG-GUc -3' miRNA: 3'- ugGCCGACUGGGCGUUGAAG----UUCgCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 53957 | 0.75 | 0.393507 |
Target: 5'- cGCCGGCUGGCgCCGCcGCgagcccucCGAGCGg -3' miRNA: 3'- -UGGCCGACUG-GGCGuUGaa------GUUCGCg -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 50546 | 0.75 | 0.393507 |
Target: 5'- cGCUGGCgUGcggguuuuGCCCGCAGCUgcuGGCGCg -3' miRNA: 3'- -UGGCCG-AC--------UGGGCGUUGAaguUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 10604 | 0.75 | 0.402108 |
Target: 5'- gGCCGGCgccGGCCCGCGcccuGCU---GGCGCu -3' miRNA: 3'- -UGGCCGa--CUGGGCGU----UGAaguUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 32781 | 0.75 | 0.402108 |
Target: 5'- gGCCGGCcgcugGACgCGCGAgUcCGAGCGCu -3' miRNA: 3'- -UGGCCGa----CUGgGCGUUgAaGUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 113417 | 0.75 | 0.402108 |
Target: 5'- gGCCGGCgccGGCCCGCGcccuGCU---GGCGCu -3' miRNA: 3'- -UGGCCGa--CUGGGCGU----UGAaguUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 30771 | 0.75 | 0.410828 |
Target: 5'- cGCCGuGCUGGCCuCGCGGCgcgUCuucggcccGGGCGCc -3' miRNA: 3'- -UGGC-CGACUGG-GCGUUGa--AG--------UUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 133584 | 0.75 | 0.410828 |
Target: 5'- cGCCGuGCUGGCCuCGCGGCgcgUCuucggcccGGGCGCc -3' miRNA: 3'- -UGGC-CGACUGG-GCGUUGa--AG--------UUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 59586 | 0.75 | 0.410828 |
Target: 5'- uCUGGCUGgcgugcgcguccGCCCGCGACgggAAGCGCa -3' miRNA: 3'- uGGCCGAC------------UGGGCGUUGaagUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 67847 | 0.75 | 0.410828 |
Target: 5'- uGCCGGCgcUGGCgCGCGGCUcgCGAcGCGCu -3' miRNA: 3'- -UGGCCG--ACUGgGCGUUGAa-GUU-CGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 14540 | 0.75 | 0.417887 |
Target: 5'- uACCGGCUGgaguaugaccGCgCCGCAGCgcgggugcuggCGGGCGCg -3' miRNA: 3'- -UGGCCGAC----------UG-GGCGUUGaa---------GUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 121013 | 0.75 | 0.418775 |
Target: 5'- aGCCGGCcGgagacacGCCCGCucGCUUCcGGCGCc -3' miRNA: 3'- -UGGCCGaC-------UGGGCGu-UGAAGuUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 28754 | 0.75 | 0.428614 |
Target: 5'- cGCgGGCccgGACCUGCAGCU---GGCGCg -3' miRNA: 3'- -UGgCCGa--CUGGGCGUUGAaguUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 118458 | 0.75 | 0.428614 |
Target: 5'- uGCCGGCUcGCCCGCGcagccaagGCUgcgCGAcGCGCc -3' miRNA: 3'- -UGGCCGAcUGGGCGU--------UGAa--GUU-CGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 61315 | 0.75 | 0.428614 |
Target: 5'- cGCCGGCagGACgCGCAGCcgCugcAGCGCg -3' miRNA: 3'- -UGGCCGa-CUGgGCGUUGaaGu--UCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 131567 | 0.75 | 0.428614 |
Target: 5'- cGCgGGCccgGACCUGCAGCU---GGCGCg -3' miRNA: 3'- -UGgCCGa--CUGGGCGUUGAaguUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 87248 | 0.74 | 0.437676 |
Target: 5'- uACCGGCUGcGCCCcgGGCgcgCGGGCGCg -3' miRNA: 3'- -UGGCCGAC-UGGGcgUUGaa-GUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 43440 | 0.74 | 0.446847 |
Target: 5'- gGCCGGCgucgcGACCCGgGGCgac-GGCGCg -3' miRNA: 3'- -UGGCCGa----CUGGGCgUUGaaguUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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