miRNA display CGI


Results 21 - 40 of 501 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 3' -55.8 NC_001847.1 + 107914 0.76 0.344473
Target:  5'- -aCGGaCUuuugcGACCCGCAGC-UCGAGCGCc -3'
miRNA:   3'- ugGCC-GA-----CUGGGCGUUGaAGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 71478 0.76 0.360319
Target:  5'- cACCGGCUGAgCCCgGCAACgguggcggCGGuGCGCg -3'
miRNA:   3'- -UGGCCGACU-GGG-CGUUGaa------GUU-CGCG- -5'
6675 3' -55.8 NC_001847.1 + 53957 0.75 0.393507
Target:  5'- cGCCGGCUGGCgCCGCcGCgagcccucCGAGCGg -3'
miRNA:   3'- -UGGCCGACUG-GGCGuUGaa------GUUCGCg -5'
6675 3' -55.8 NC_001847.1 + 50546 0.75 0.393507
Target:  5'- cGCUGGCgUGcggguuuuGCCCGCAGCUgcuGGCGCg -3'
miRNA:   3'- -UGGCCG-AC--------UGGGCGUUGAaguUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 87016 0.75 0.393507
Target:  5'- -gCGGCUGGCCCGCGACUUUcucgGAG-GUc -3'
miRNA:   3'- ugGCCGACUGGGCGUUGAAG----UUCgCG- -5'
6675 3' -55.8 NC_001847.1 + 113417 0.75 0.402108
Target:  5'- gGCCGGCgccGGCCCGCGcccuGCU---GGCGCu -3'
miRNA:   3'- -UGGCCGa--CUGGGCGU----UGAaguUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 32781 0.75 0.402108
Target:  5'- gGCCGGCcgcugGACgCGCGAgUcCGAGCGCu -3'
miRNA:   3'- -UGGCCGa----CUGgGCGUUgAaGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 10604 0.75 0.402108
Target:  5'- gGCCGGCgccGGCCCGCGcccuGCU---GGCGCu -3'
miRNA:   3'- -UGGCCGa--CUGGGCGU----UGAaguUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 133584 0.75 0.410828
Target:  5'- cGCCGuGCUGGCCuCGCGGCgcgUCuucggcccGGGCGCc -3'
miRNA:   3'- -UGGC-CGACUGG-GCGUUGa--AG--------UUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 30771 0.75 0.410828
Target:  5'- cGCCGuGCUGGCCuCGCGGCgcgUCuucggcccGGGCGCc -3'
miRNA:   3'- -UGGC-CGACUGG-GCGUUGa--AG--------UUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 67847 0.75 0.410828
Target:  5'- uGCCGGCgcUGGCgCGCGGCUcgCGAcGCGCu -3'
miRNA:   3'- -UGGCCG--ACUGgGCGUUGAa-GUU-CGCG- -5'
6675 3' -55.8 NC_001847.1 + 59586 0.75 0.410828
Target:  5'- uCUGGCUGgcgugcgcguccGCCCGCGACgggAAGCGCa -3'
miRNA:   3'- uGGCCGAC------------UGGGCGUUGaagUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 14540 0.75 0.417887
Target:  5'- uACCGGCUGgaguaugaccGCgCCGCAGCgcgggugcuggCGGGCGCg -3'
miRNA:   3'- -UGGCCGAC----------UG-GGCGUUGaa---------GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 121013 0.75 0.418775
Target:  5'- aGCCGGCcGgagacacGCCCGCucGCUUCcGGCGCc -3'
miRNA:   3'- -UGGCCGaC-------UGGGCGu-UGAAGuUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 28754 0.75 0.428614
Target:  5'- cGCgGGCccgGACCUGCAGCU---GGCGCg -3'
miRNA:   3'- -UGgCCGa--CUGGGCGUUGAaguUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 118458 0.75 0.428614
Target:  5'- uGCCGGCUcGCCCGCGcagccaagGCUgcgCGAcGCGCc -3'
miRNA:   3'- -UGGCCGAcUGGGCGU--------UGAa--GUU-CGCG- -5'
6675 3' -55.8 NC_001847.1 + 131567 0.75 0.428614
Target:  5'- cGCgGGCccgGACCUGCAGCU---GGCGCg -3'
miRNA:   3'- -UGgCCGa--CUGGGCGUUGAaguUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 61315 0.75 0.428614
Target:  5'- cGCCGGCagGACgCGCAGCcgCugcAGCGCg -3'
miRNA:   3'- -UGGCCGa-CUGgGCGUUGaaGu--UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 87248 0.74 0.437676
Target:  5'- uACCGGCUGcGCCCcgGGCgcgCGGGCGCg -3'
miRNA:   3'- -UGGCCGAC-UGGGcgUUGaa-GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 43440 0.74 0.446847
Target:  5'- gGCCGGCgucgcGACCCGgGGCgac-GGCGCg -3'
miRNA:   3'- -UGGCCGa----CUGGGCgUUGaaguUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.