Results 1 - 20 of 501 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6675 | 3' | -55.8 | NC_001847.1 | + | 116888 | 1.1 | 0.002001 |
Target: 5'- gACCGGCUGACCCGCAACUUCAAGCGCc -3' miRNA: 3'- -UGGCCGACUGGGCGUUGAAGUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 13922 | 0.83 | 0.131343 |
Target: 5'- uCCGGgaGGCCCGCGACggcgUCAuGCGCg -3' miRNA: 3'- uGGCCgaCUGGGCGUUGa---AGUuCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 86666 | 0.83 | 0.13483 |
Target: 5'- cGCCGcGCUcGACCCGC-GCUUUGAGCGCu -3' miRNA: 3'- -UGGC-CGA-CUGGGCGuUGAAGUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 106095 | 0.8 | 0.208454 |
Target: 5'- gGCCGGCgagcacGGCgCGCAGCUcggCGAGCGCg -3' miRNA: 3'- -UGGCCGa-----CUGgGCGUUGAa--GUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 3282 | 0.8 | 0.208454 |
Target: 5'- gGCCGGCgagcacGGCgCGCAGCUcggCGAGCGCg -3' miRNA: 3'- -UGGCCGa-----CUGgGCGUUGAa--GUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 23855 | 0.8 | 0.219104 |
Target: 5'- aGCCGGCUGGCCuCGCGcguaaaguGCUUUcgcAGCGCg -3' miRNA: 3'- -UGGCCGACUGG-GCGU--------UGAAGu--UCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 29313 | 0.79 | 0.235946 |
Target: 5'- uGCuCGGCgcGGCCCGCGACgcggUgGAGCGCg -3' miRNA: 3'- -UG-GCCGa-CUGGGCGUUGa---AgUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 132126 | 0.79 | 0.235946 |
Target: 5'- uGCuCGGCgcGGCCCGCGACgcggUgGAGCGCg -3' miRNA: 3'- -UG-GCCGa-CUGGGCGUUGa---AgUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 34793 | 0.78 | 0.279465 |
Target: 5'- cGCgCGGCUacGACCCGCGGCcgCuGGCGCg -3' miRNA: 3'- -UG-GCCGA--CUGGGCGUUGaaGuUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 57932 | 0.78 | 0.286179 |
Target: 5'- cCCGGC-GGCCCGCGGCUccgUCGcgggcagcAGCGCg -3' miRNA: 3'- uGGCCGaCUGGGCGUUGA---AGU--------UCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 46602 | 0.77 | 0.307082 |
Target: 5'- cGCCGGCgcGGCCuCGCGGCgcaCGAGCGUg -3' miRNA: 3'- -UGGCCGa-CUGG-GCGUUGaa-GUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 51084 | 0.77 | 0.314305 |
Target: 5'- cGCgGGCUGGucgaggaCCGCGACUUCAAgauGCGCg -3' miRNA: 3'- -UGgCCGACUg------GGCGUUGAAGUU---CGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 115698 | 0.77 | 0.314305 |
Target: 5'- -gCGGCUGGCCCgGCAGCg---GGCGCg -3' miRNA: 3'- ugGCCGACUGGG-CGUUGaaguUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 90023 | 0.77 | 0.321656 |
Target: 5'- cGCCGaGCUGcACCUGC-GCUUCGAGgGCc -3' miRNA: 3'- -UGGC-CGAC-UGGGCGuUGAAGUUCgCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 36980 | 0.77 | 0.321656 |
Target: 5'- cGCCGGCgagcgGGCCCGCGccgaGCggCGgcGGCGCg -3' miRNA: 3'- -UGGCCGa----CUGGGCGU----UGaaGU--UCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 13020 | 0.77 | 0.321656 |
Target: 5'- cGCCGGCcgucgcGACCUGCAGCgUCA-GCGCc -3' miRNA: 3'- -UGGCCGa-----CUGGGCGUUGaAGUuCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 40248 | 0.77 | 0.321656 |
Target: 5'- cCCGGCUGGCCCGUGGC----GGUGCg -3' miRNA: 3'- uGGCCGACUGGGCGUUGaaguUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 83886 | 0.77 | 0.326877 |
Target: 5'- cACCGGCUG-CCCGCAgaagaugccguggcACUggcUGAGCGCu -3' miRNA: 3'- -UGGCCGACuGGGCGU--------------UGAa--GUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 115704 | 0.76 | 0.343694 |
Target: 5'- aGCCGGCUGcgGCCCGUGugcGCUUgccgccaCGGGCGCg -3' miRNA: 3'- -UGGCCGAC--UGGGCGU---UGAA-------GUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 92647 | 0.76 | 0.344473 |
Target: 5'- cCCGGCgguuucGCCCGCAgcGCUUC-GGCGCg -3' miRNA: 3'- uGGCCGac----UGGGCGU--UGAAGuUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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