miRNA display CGI


Results 1 - 20 of 501 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 3' -55.8 NC_001847.1 + 587 0.67 0.855211
Target:  5'- cGCCGGgucCUGGCCCuccGCGGCcgcuccgCAgcGGCGCg -3'
miRNA:   3'- -UGGCC---GACUGGG---CGUUGaa-----GU--UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 979 0.69 0.728232
Target:  5'- gGCCGGCggGGCuuccgCCGCGGCggcggCAcGCGCu -3'
miRNA:   3'- -UGGCCGa-CUG-----GGCGUUGaa---GUuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 1188 0.72 0.543758
Target:  5'- cACCGccGC-GGCCgGCAGCUcgUCGGGCGCc -3'
miRNA:   3'- -UGGC--CGaCUGGgCGUUGA--AGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 1479 0.68 0.786186
Target:  5'- -gCGGCaGAgCCGCAGCggCG-GCGCc -3'
miRNA:   3'- ugGCCGaCUgGGCGUUGaaGUuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 1888 0.73 0.533706
Target:  5'- aGCCGGUUG-CCCaGCG-CcgCGAGCGCg -3'
miRNA:   3'- -UGGCCGACuGGG-CGUuGaaGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 2102 0.66 0.898555
Target:  5'- cGCgCGGCggcGGgCCGCGAUcUCGgccAGCGCc -3'
miRNA:   3'- -UG-GCCGa--CUgGGCGUUGaAGU---UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 2773 0.71 0.614437
Target:  5'- cGCCGGCgccCCCGCcggcggccuccagGGCcgCGAGCGCg -3'
miRNA:   3'- -UGGCCGacuGGGCG-------------UUGaaGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 2990 0.66 0.898555
Target:  5'- gGCCGGCgcugGAgCCGCGcgcgcuccaccGCgucgCGGGcCGCg -3'
miRNA:   3'- -UGGCCGa---CUgGGCGU-----------UGaa--GUUC-GCG- -5'
6675 3' -55.8 NC_001847.1 + 3136 0.67 0.822111
Target:  5'- cACCGGgaGcCCgGCGGCgcCGgcGGCGCg -3'
miRNA:   3'- -UGGCCgaCuGGgCGUUGaaGU--UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 3244 0.66 0.898555
Target:  5'- cGCCGuGCUcGCCgGCGGCag-GGGCGCc -3'
miRNA:   3'- -UGGC-CGAcUGGgCGUUGaagUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 3282 0.8 0.208454
Target:  5'- gGCCGGCgagcacGGCgCGCAGCUcggCGAGCGCg -3'
miRNA:   3'- -UGGCCGa-----CUGgGCGUUGAa--GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 3543 0.71 0.625827
Target:  5'- cCCGGCaGcCCUGCAcgcgccGCUgcagCAGGCGCg -3'
miRNA:   3'- uGGCCGaCuGGGCGU------UGAa---GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 3577 0.69 0.757721
Target:  5'- cGCCaGCUGcagguccggGCCCGCgAGCUUC--GCGCu -3'
miRNA:   3'- -UGGcCGAC---------UGGGCG-UUGAAGuuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 3934 0.73 0.533706
Target:  5'- cCCGcGCUGGCgCCGCGGCgggggGGGCGCc -3'
miRNA:   3'- uGGC-CGACUG-GGCGUUGaag--UUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 4356 0.71 0.636187
Target:  5'- cCCGGCcgcGGCcgccuccaCCGCGACcgCGAGCGCg -3'
miRNA:   3'- uGGCCGa--CUG--------GGCGUUGaaGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 4404 0.66 0.870549
Target:  5'- cGCCGccGUcGACgCCGaCGGCggCGAGCGCg -3'
miRNA:   3'- -UGGC--CGaCUG-GGC-GUUGaaGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 4628 0.66 0.885011
Target:  5'- cGCgGGC-GGCCCGCcGGCgcUCGcGCGCc -3'
miRNA:   3'- -UGgCCGaCUGGGCG-UUGa-AGUuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 5206 0.67 0.822111
Target:  5'- cGCCGGCUcucuCgCCGCGGCggCcggcgGGGCGCg -3'
miRNA:   3'- -UGGCCGAcu--G-GGCGUUGaaG-----UUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 5277 0.66 0.885011
Target:  5'- uCCGGa-GACCCGgGgacggggguACggCGAGCGCg -3'
miRNA:   3'- uGGCCgaCUGGGCgU---------UGaaGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 5684 0.71 0.603063
Target:  5'- gGCCGGCcggggccgcccaGACCCgGCAG-UUCAGGUGCg -3'
miRNA:   3'- -UGGCCGa-----------CUGGG-CGUUgAAGUUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.