Results 1 - 20 of 501 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6675 | 3' | -55.8 | NC_001847.1 | + | 587 | 0.67 | 0.855211 |
Target: 5'- cGCCGGgucCUGGCCCuccGCGGCcgcuccgCAgcGGCGCg -3' miRNA: 3'- -UGGCC---GACUGGG---CGUUGaa-----GU--UCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 979 | 0.69 | 0.728232 |
Target: 5'- gGCCGGCggGGCuuccgCCGCGGCggcggCAcGCGCu -3' miRNA: 3'- -UGGCCGa-CUG-----GGCGUUGaa---GUuCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 1188 | 0.72 | 0.543758 |
Target: 5'- cACCGccGC-GGCCgGCAGCUcgUCGGGCGCc -3' miRNA: 3'- -UGGC--CGaCUGGgCGUUGA--AGUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 1479 | 0.68 | 0.786186 |
Target: 5'- -gCGGCaGAgCCGCAGCggCG-GCGCc -3' miRNA: 3'- ugGCCGaCUgGGCGUUGaaGUuCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 1888 | 0.73 | 0.533706 |
Target: 5'- aGCCGGUUG-CCCaGCG-CcgCGAGCGCg -3' miRNA: 3'- -UGGCCGACuGGG-CGUuGaaGUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 2102 | 0.66 | 0.898555 |
Target: 5'- cGCgCGGCggcGGgCCGCGAUcUCGgccAGCGCc -3' miRNA: 3'- -UG-GCCGa--CUgGGCGUUGaAGU---UCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 2773 | 0.71 | 0.614437 |
Target: 5'- cGCCGGCgccCCCGCcggcggccuccagGGCcgCGAGCGCg -3' miRNA: 3'- -UGGCCGacuGGGCG-------------UUGaaGUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 2990 | 0.66 | 0.898555 |
Target: 5'- gGCCGGCgcugGAgCCGCGcgcgcuccaccGCgucgCGGGcCGCg -3' miRNA: 3'- -UGGCCGa---CUgGGCGU-----------UGaa--GUUC-GCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 3136 | 0.67 | 0.822111 |
Target: 5'- cACCGGgaGcCCgGCGGCgcCGgcGGCGCg -3' miRNA: 3'- -UGGCCgaCuGGgCGUUGaaGU--UCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 3244 | 0.66 | 0.898555 |
Target: 5'- cGCCGuGCUcGCCgGCGGCag-GGGCGCc -3' miRNA: 3'- -UGGC-CGAcUGGgCGUUGaagUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 3282 | 0.8 | 0.208454 |
Target: 5'- gGCCGGCgagcacGGCgCGCAGCUcggCGAGCGCg -3' miRNA: 3'- -UGGCCGa-----CUGgGCGUUGAa--GUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 3543 | 0.71 | 0.625827 |
Target: 5'- cCCGGCaGcCCUGCAcgcgccGCUgcagCAGGCGCg -3' miRNA: 3'- uGGCCGaCuGGGCGU------UGAa---GUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 3577 | 0.69 | 0.757721 |
Target: 5'- cGCCaGCUGcagguccggGCCCGCgAGCUUC--GCGCu -3' miRNA: 3'- -UGGcCGAC---------UGGGCG-UUGAAGuuCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 3934 | 0.73 | 0.533706 |
Target: 5'- cCCGcGCUGGCgCCGCGGCgggggGGGCGCc -3' miRNA: 3'- uGGC-CGACUG-GGCGUUGaag--UUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 4356 | 0.71 | 0.636187 |
Target: 5'- cCCGGCcgcGGCcgccuccaCCGCGACcgCGAGCGCg -3' miRNA: 3'- uGGCCGa--CUG--------GGCGUUGaaGUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 4404 | 0.66 | 0.870549 |
Target: 5'- cGCCGccGUcGACgCCGaCGGCggCGAGCGCg -3' miRNA: 3'- -UGGC--CGaCUG-GGC-GUUGaaGUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 4628 | 0.66 | 0.885011 |
Target: 5'- cGCgGGC-GGCCCGCcGGCgcUCGcGCGCc -3' miRNA: 3'- -UGgCCGaCUGGGCG-UUGa-AGUuCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 5206 | 0.67 | 0.822111 |
Target: 5'- cGCCGGCUcucuCgCCGCGGCggCcggcgGGGCGCg -3' miRNA: 3'- -UGGCCGAcu--G-GGCGUUGaaG-----UUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 5277 | 0.66 | 0.885011 |
Target: 5'- uCCGGa-GACCCGgGgacggggguACggCGAGCGCg -3' miRNA: 3'- uGGCCgaCUGGGCgU---------UGaaGUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 5684 | 0.71 | 0.603063 |
Target: 5'- gGCCGGCcggggccgcccaGACCCgGCAG-UUCAGGUGCg -3' miRNA: 3'- -UGGCCGa-----------CUGGG-CGUUgAAGUUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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