miRNA display CGI


Results 21 - 40 of 501 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 3' -55.8 NC_001847.1 + 5707 0.66 0.8919
Target:  5'- aGCCGcUUGGacacCCCGCAGCaggCGGGCGUc -3'
miRNA:   3'- -UGGCcGACU----GGGCGUUGaa-GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 5835 0.67 0.855211
Target:  5'- cCCGGCaGGCCCGCcuuGCacCAGGCccGCc -3'
miRNA:   3'- uGGCCGaCUGGGCGu--UGaaGUUCG--CG- -5'
6675 3' -55.8 NC_001847.1 + 6691 0.7 0.708132
Target:  5'- gGCCGGCcgGGCgCGCGcGCagggcCGAGCGCa -3'
miRNA:   3'- -UGGCCGa-CUGgGCGU-UGaa---GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 6927 0.66 0.870549
Target:  5'- aGCCccCUGGCCCGCAguGCUUCc-GCGg -3'
miRNA:   3'- -UGGccGACUGGGCGU--UGAAGuuCGCg -5'
6675 3' -55.8 NC_001847.1 + 7132 0.66 0.898555
Target:  5'- uGCCGGuCUuGCCCcCucccCUUCGGGCGUg -3'
miRNA:   3'- -UGGCC-GAcUGGGcGuu--GAAGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 8092 0.65 0.902435
Target:  5'- -gCGGCgaGAUCgGCGACgcggcgccagcgCAGGCGCg -3'
miRNA:   3'- ugGCCGa-CUGGgCGUUGaa----------GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 8239 0.69 0.728232
Target:  5'- -aCGcGCUGGCCUGCGGCagcaaCGAGCGg -3'
miRNA:   3'- ugGC-CGACUGGGCGUUGaa---GUUCGCg -5'
6675 3' -55.8 NC_001847.1 + 9635 0.72 0.55387
Target:  5'- cGCCGcGCcGGCCCGCcGCU-CGAGCaGCc -3'
miRNA:   3'- -UGGC-CGaCUGGGCGuUGAaGUUCG-CG- -5'
6675 3' -55.8 NC_001847.1 + 10167 0.66 0.8919
Target:  5'- aGCaGGCcGGCCCGCugcgccGGCUUUu-GCGCg -3'
miRNA:   3'- -UGgCCGaCUGGGCG------UUGAAGuuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 10240 0.66 0.877892
Target:  5'- cCCGGCgcgccugccgGGCCCGCuuuuCggagcCGAGUGCg -3'
miRNA:   3'- uGGCCGa---------CUGGGCGuu--Gaa---GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 10561 0.66 0.891221
Target:  5'- gGCCGGCgccgGGCCCggcgccgGCGGCccccccgCGcGCGCg -3'
miRNA:   3'- -UGGCCGa---CUGGG-------CGUUGaa-----GUuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 10604 0.75 0.402108
Target:  5'- gGCCGGCgccGGCCCGCGcccuGCU---GGCGCu -3'
miRNA:   3'- -UGGCCGa--CUGGGCGU----UGAaguUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 10699 0.7 0.697978
Target:  5'- cGCCcgGGCgcGGCCCGCGcCggcCAAGCGCc -3'
miRNA:   3'- -UGG--CCGa-CUGGGCGUuGaa-GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 10937 0.69 0.71822
Target:  5'- aGCCGGCUGGC--GCGGCUggccuuuGCGCa -3'
miRNA:   3'- -UGGCCGACUGggCGUUGAaguu---CGCG- -5'
6675 3' -55.8 NC_001847.1 + 11909 0.71 0.615471
Target:  5'- uCCGcGCUGGCgCgGCAucguCUUCAAGCGg -3'
miRNA:   3'- uGGC-CGACUG-GgCGUu---GAAGUUCGCg -5'
6675 3' -55.8 NC_001847.1 + 12096 0.68 0.767335
Target:  5'- uCCGGC--GCCCGCGgccguACUUCcAGCGg -3'
miRNA:   3'- uGGCCGacUGGGCGU-----UGAAGuUCGCg -5'
6675 3' -55.8 NC_001847.1 + 12253 0.67 0.834044
Target:  5'- --gGGCUGcgaugcccaccaguCCCGCGAgUcCAAGCGCg -3'
miRNA:   3'- uggCCGACu-------------GGGCGUUgAaGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 12460 0.68 0.776827
Target:  5'- cGCgCGGCgGAgccUCCGCGGCUUCccGCGUg -3'
miRNA:   3'- -UG-GCCGaCU---GGGCGUUGAAGuuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 12740 0.68 0.767335
Target:  5'- gGCCGGgUGcgGCCCaGCGcCUUCuucGCGCa -3'
miRNA:   3'- -UGGCCgAC--UGGG-CGUuGAAGuu-CGCG- -5'
6675 3' -55.8 NC_001847.1 + 13020 0.77 0.321656
Target:  5'- cGCCGGCcgucgcGACCUGCAGCgUCA-GCGCc -3'
miRNA:   3'- -UGGCCGa-----CUGGGCGUUGaAGUuCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.