miRNA display CGI


Results 21 - 40 of 501 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 3' -55.8 NC_001847.1 + 131668 0.67 0.847229
Target:  5'- cGCCGGUcggggacgccaUGGCCgCGCAgaacgcGCUgUggGCGCu -3'
miRNA:   3'- -UGGCCG-----------ACUGG-GCGU------UGAaGuuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 131567 0.75 0.428614
Target:  5'- cGCgGGCccgGACCUGCAGCU---GGCGCg -3'
miRNA:   3'- -UGgCCGa--CUGGGCGUUGAaguUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 131240 0.69 0.757721
Target:  5'- aACCGGC--GCCCGCGcugGCUaCGccgcGGCGCc -3'
miRNA:   3'- -UGGCCGacUGGGCGU---UGAaGU----UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 131194 0.66 0.8979
Target:  5'- cGCCGGa-GACggcgccccccccgCCGCGGCgccagcgCGGGCGCg -3'
miRNA:   3'- -UGGCCgaCUG-------------GGCGUUGaa-----GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 130946 0.66 0.870549
Target:  5'- uUUGGCUGccuGCgCGCGGCccaCGGGCGCg -3'
miRNA:   3'- uGGCCGAC---UGgGCGUUGaa-GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 130940 0.66 0.877892
Target:  5'- gGCCGGCgacguugGGCCCGagGACUgc-AGCGa -3'
miRNA:   3'- -UGGCCGa------CUGGGCg-UUGAaguUCGCg -5'
6675 3' -55.8 NC_001847.1 + 130895 0.69 0.757721
Target:  5'- gACUGGCUG-CUggCGCAGCUcgugCcGGCGCg -3'
miRNA:   3'- -UGGCCGACuGG--GCGUUGAa---GuUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 130522 0.67 0.822111
Target:  5'- cGCCGGCgggccGCCCGCGccgaGCUggcCGAGCuGUg -3'
miRNA:   3'- -UGGCCGac---UGGGCGU----UGAa--GUUCG-CG- -5'
6675 3' -55.8 NC_001847.1 + 130316 0.68 0.786186
Target:  5'- cGCCGGC-GGCCC-CAcGC-UCAAGgGCa -3'
miRNA:   3'- -UGGCCGaCUGGGcGU-UGaAGUUCgCG- -5'
6675 3' -55.8 NC_001847.1 + 129989 0.74 0.47403
Target:  5'- cGCCGaugcCUGGCCCGCAcaccccuGCUUCuucuacaaGAGCGCg -3'
miRNA:   3'- -UGGCc---GACUGGGCGU-------UGAAG--------UUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 129907 0.65 0.903073
Target:  5'- cCCGcGgaGACCUGCAcggagccaugcgcaGCUUCcgucgcGGCGCg -3'
miRNA:   3'- uGGC-CgaCUGGGCGU--------------UGAAGu-----UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 129367 0.7 0.656889
Target:  5'- gGCCcggGGCUaGACgCCGC-GCUUCGcguuGGCGCg -3'
miRNA:   3'- -UGG---CCGA-CUG-GGCGuUGAAGU----UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 129161 0.68 0.786186
Target:  5'- uUCGGCUGcccCCCGCAacagccgagGCUUaCGcGCGCg -3'
miRNA:   3'- uGGCCGACu--GGGCGU---------UGAA-GUuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 128203 0.67 0.839047
Target:  5'- cCCGcGcCUGGCCCgucuucguguGCAcCUUCAacAGCGCg -3'
miRNA:   3'- uGGC-C-GACUGGG----------CGUuGAAGU--UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 127343 0.66 0.870549
Target:  5'- gGCCGGCUG--CCGCGGCag-GGGCGg -3'
miRNA:   3'- -UGGCCGACugGGCGUUGaagUUCGCg -5'
6675 3' -55.8 NC_001847.1 + 125809 0.73 0.533706
Target:  5'- gGCCGGCgGGCgUGCAGCUcaAAGCGg -3'
miRNA:   3'- -UGGCCGaCUGgGCGUUGAagUUCGCg -5'
6675 3' -55.8 NC_001847.1 + 125587 0.68 0.776827
Target:  5'- gGCgGGCUGGacggCUGCAGCgcu-GGCGCa -3'
miRNA:   3'- -UGgCCGACUg---GGCGUUGaaguUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 125502 0.73 0.494221
Target:  5'- cCCGGCUGcucgagcggcggGCCggCGCGGCggCGGGCGCa -3'
miRNA:   3'- uGGCCGAC------------UGG--GCGUUGaaGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 124976 0.67 0.822111
Target:  5'- aGCCGGCgcagcgGGCCgGCcuGC-UCGGGCGa -3'
miRNA:   3'- -UGGCCGa-----CUGGgCGu-UGaAGUUCGCg -5'
6675 3' -55.8 NC_001847.1 + 124934 0.68 0.795403
Target:  5'- aGCgGGCgcgcccugGGCCCgGCGGCggCGgcGGCGCg -3'
miRNA:   3'- -UGgCCGa-------CUGGG-CGUUGaaGU--UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.