Results 1 - 20 of 501 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6675 | 3' | -55.8 | NC_001847.1 | + | 135005 | 0.66 | 0.870549 |
Target: 5'- cCCGGCcggGGCCCGaGGCccgCGGGCGg -3' miRNA: 3'- uGGCCGa--CUGGGCgUUGaa-GUUCGCg -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 134236 | 0.68 | 0.767335 |
Target: 5'- cGCCGGCgggcggcGGCCgGCGGCcgCGgcggccccGGCGCg -3' miRNA: 3'- -UGGCCGa------CUGGgCGUUGaaGU--------UCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 134046 | 0.67 | 0.839047 |
Target: 5'- -gCGGCgccGCCCGCGGCcgCG-GCGCc -3' miRNA: 3'- ugGCCGac-UGGGCGUUGaaGUuCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 133909 | 0.69 | 0.747992 |
Target: 5'- gGCCGGUguaccUGGCCUGCGgGCggCGcGCGCu -3' miRNA: 3'- -UGGCCG-----ACUGGGCGU-UGaaGUuCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 133584 | 0.75 | 0.410828 |
Target: 5'- cGCCGuGCUGGCCuCGCGGCgcgUCuucggcccGGGCGCc -3' miRNA: 3'- -UGGC-CGACUGG-GCGUUGa--AG--------UUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 133550 | 0.72 | 0.564038 |
Target: 5'- cGCCGcgcGCUGGCCCgaGCGGCgcgCuGGCGCg -3' miRNA: 3'- -UGGC---CGACUGGG--CGUUGaa-GuUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 133468 | 0.67 | 0.860677 |
Target: 5'- cCCGagaaCUGGCCgCGCGACggcccggccgucgggCAGGCGCa -3' miRNA: 3'- uGGCc---GACUGG-GCGUUGaa-------------GUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 133273 | 0.72 | 0.590686 |
Target: 5'- aACCGGCUgcugcugagcgccGACUCGCAcgccugggccgggcGCUggaCGGGCGCg -3' miRNA: 3'- -UGGCCGA-------------CUGGGCGU--------------UGAa--GUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 133181 | 0.66 | 0.877892 |
Target: 5'- cGCUGGC-GGCgCCGCccGGCgaggaCGAGCGCc -3' miRNA: 3'- -UGGCCGaCUG-GGCG--UUGaa---GUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 133127 | 0.72 | 0.543758 |
Target: 5'- cGCCGuGCUGgaaaACCUGCGGCUgaagCuAGCGCc -3' miRNA: 3'- -UGGC-CGAC----UGGGCGUUGAa---GuUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 132982 | 0.66 | 0.885011 |
Target: 5'- cGCgGGCgcugcgaGACCUGguGCUgCGcAGCGCa -3' miRNA: 3'- -UGgCCGa------CUGGGCguUGAaGU-UCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 132856 | 0.66 | 0.885011 |
Target: 5'- cCCGGC-GGCCCcgccgccgacgGCGGCUUCcgccGCGUg -3' miRNA: 3'- uGGCCGaCUGGG-----------CGUUGAAGuu--CGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 132543 | 0.66 | 0.870549 |
Target: 5'- uCCGGCgcggcgGGCucgcgugcggCCGCGGCggccgcgCAGGCGCc -3' miRNA: 3'- uGGCCGa-----CUG----------GGCGUUGaa-----GUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 132482 | 0.7 | 0.656889 |
Target: 5'- uGCCGGCcGAgCCGCcgGGCga-AGGCGCc -3' miRNA: 3'- -UGGCCGaCUgGGCG--UUGaagUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 132324 | 0.67 | 0.862987 |
Target: 5'- cGCCGGCggagGugCCggcGCGGCUggCGGccGCGCu -3' miRNA: 3'- -UGGCCGa---CugGG---CGUUGAa-GUU--CGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 132272 | 0.67 | 0.830672 |
Target: 5'- gGCgCGGC-GGCCCGCGcg-UCGgccugGGCGCu -3' miRNA: 3'- -UG-GCCGaCUGGGCGUugaAGU-----UCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 132126 | 0.79 | 0.235946 |
Target: 5'- uGCuCGGCgcGGCCCGCGACgcggUgGAGCGCg -3' miRNA: 3'- -UG-GCCGa-CUGGGCGUUGa---AgUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 132057 | 0.69 | 0.73816 |
Target: 5'- uGCCGGCcgcGGCCUGCGcgccggacgcGCUggcGGCGCa -3' miRNA: 3'- -UGGCCGa--CUGGGCGU----------UGAaguUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 131869 | 0.66 | 0.898555 |
Target: 5'- cGCCGuGCUcgccGGCCgCGCGGCgcc-GGCGCc -3' miRNA: 3'- -UGGC-CGA----CUGG-GCGUUGaaguUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 131821 | 0.66 | 0.877892 |
Target: 5'- gGCCGGC--GCCgGCGGCagCG-GCGCc -3' miRNA: 3'- -UGGCCGacUGGgCGUUGaaGUuCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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