miRNA display CGI


Results 1 - 20 of 501 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 3' -55.8 NC_001847.1 + 135005 0.66 0.870549
Target:  5'- cCCGGCcggGGCCCGaGGCccgCGGGCGg -3'
miRNA:   3'- uGGCCGa--CUGGGCgUUGaa-GUUCGCg -5'
6675 3' -55.8 NC_001847.1 + 134236 0.68 0.767335
Target:  5'- cGCCGGCgggcggcGGCCgGCGGCcgCGgcggccccGGCGCg -3'
miRNA:   3'- -UGGCCGa------CUGGgCGUUGaaGU--------UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 134046 0.67 0.839047
Target:  5'- -gCGGCgccGCCCGCGGCcgCG-GCGCc -3'
miRNA:   3'- ugGCCGac-UGGGCGUUGaaGUuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 133909 0.69 0.747992
Target:  5'- gGCCGGUguaccUGGCCUGCGgGCggCGcGCGCu -3'
miRNA:   3'- -UGGCCG-----ACUGGGCGU-UGaaGUuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 133584 0.75 0.410828
Target:  5'- cGCCGuGCUGGCCuCGCGGCgcgUCuucggcccGGGCGCc -3'
miRNA:   3'- -UGGC-CGACUGG-GCGUUGa--AG--------UUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 133550 0.72 0.564038
Target:  5'- cGCCGcgcGCUGGCCCgaGCGGCgcgCuGGCGCg -3'
miRNA:   3'- -UGGC---CGACUGGG--CGUUGaa-GuUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 133468 0.67 0.860677
Target:  5'- cCCGagaaCUGGCCgCGCGACggcccggccgucgggCAGGCGCa -3'
miRNA:   3'- uGGCc---GACUGG-GCGUUGaa-------------GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 133273 0.72 0.590686
Target:  5'- aACCGGCUgcugcugagcgccGACUCGCAcgccugggccgggcGCUggaCGGGCGCg -3'
miRNA:   3'- -UGGCCGA-------------CUGGGCGU--------------UGAa--GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 133181 0.66 0.877892
Target:  5'- cGCUGGC-GGCgCCGCccGGCgaggaCGAGCGCc -3'
miRNA:   3'- -UGGCCGaCUG-GGCG--UUGaa---GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 133127 0.72 0.543758
Target:  5'- cGCCGuGCUGgaaaACCUGCGGCUgaagCuAGCGCc -3'
miRNA:   3'- -UGGC-CGAC----UGGGCGUUGAa---GuUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 132982 0.66 0.885011
Target:  5'- cGCgGGCgcugcgaGACCUGguGCUgCGcAGCGCa -3'
miRNA:   3'- -UGgCCGa------CUGGGCguUGAaGU-UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 132856 0.66 0.885011
Target:  5'- cCCGGC-GGCCCcgccgccgacgGCGGCUUCcgccGCGUg -3'
miRNA:   3'- uGGCCGaCUGGG-----------CGUUGAAGuu--CGCG- -5'
6675 3' -55.8 NC_001847.1 + 132543 0.66 0.870549
Target:  5'- uCCGGCgcggcgGGCucgcgugcggCCGCGGCggccgcgCAGGCGCc -3'
miRNA:   3'- uGGCCGa-----CUG----------GGCGUUGaa-----GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 132482 0.7 0.656889
Target:  5'- uGCCGGCcGAgCCGCcgGGCga-AGGCGCc -3'
miRNA:   3'- -UGGCCGaCUgGGCG--UUGaagUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 132324 0.67 0.862987
Target:  5'- cGCCGGCggagGugCCggcGCGGCUggCGGccGCGCu -3'
miRNA:   3'- -UGGCCGa---CugGG---CGUUGAa-GUU--CGCG- -5'
6675 3' -55.8 NC_001847.1 + 132272 0.67 0.830672
Target:  5'- gGCgCGGC-GGCCCGCGcg-UCGgccugGGCGCu -3'
miRNA:   3'- -UG-GCCGaCUGGGCGUugaAGU-----UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 132126 0.79 0.235946
Target:  5'- uGCuCGGCgcGGCCCGCGACgcggUgGAGCGCg -3'
miRNA:   3'- -UG-GCCGa-CUGGGCGUUGa---AgUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 132057 0.69 0.73816
Target:  5'- uGCCGGCcgcGGCCUGCGcgccggacgcGCUggcGGCGCa -3'
miRNA:   3'- -UGGCCGa--CUGGGCGU----------UGAaguUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 131869 0.66 0.898555
Target:  5'- cGCCGuGCUcgccGGCCgCGCGGCgcc-GGCGCc -3'
miRNA:   3'- -UGGC-CGA----CUGG-GCGUUGaaguUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 131821 0.66 0.877892
Target:  5'- gGCCGGC--GCCgGCGGCagCG-GCGCc -3'
miRNA:   3'- -UGGCCGacUGGgCGUUGaaGUuCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.