miRNA display CGI


Results 1 - 20 of 501 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 3' -55.8 NC_001847.1 + 13922 0.83 0.131343
Target:  5'- uCCGGgaGGCCCGCGACggcgUCAuGCGCg -3'
miRNA:   3'- uGGCCgaCUGGGCGUUGa---AGUuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 14540 0.75 0.417887
Target:  5'- uACCGGCUGgaguaugaccGCgCCGCAGCgcgggugcuggCGGGCGCg -3'
miRNA:   3'- -UGGCCGAC----------UG-GGCGUUGaa---------GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 133584 0.75 0.410828
Target:  5'- cGCCGuGCUGGCCuCGCGGCgcgUCuucggcccGGGCGCc -3'
miRNA:   3'- -UGGC-CGACUGG-GCGUUGa--AG--------UUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 59586 0.75 0.410828
Target:  5'- uCUGGCUGgcgugcgcguccGCCCGCGACgggAAGCGCa -3'
miRNA:   3'- uGGCCGAC------------UGGGCGUUGaagUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 32781 0.75 0.402108
Target:  5'- gGCCGGCcgcugGACgCGCGAgUcCGAGCGCu -3'
miRNA:   3'- -UGGCCGa----CUGgGCGUUgAaGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 113417 0.75 0.402108
Target:  5'- gGCCGGCgccGGCCCGCGcccuGCU---GGCGCu -3'
miRNA:   3'- -UGGCCGa--CUGGGCGU----UGAaguUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 50546 0.75 0.393507
Target:  5'- cGCUGGCgUGcggguuuuGCCCGCAGCUgcuGGCGCg -3'
miRNA:   3'- -UGGCCG-AC--------UGGGCGUUGAaguUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 87016 0.75 0.393507
Target:  5'- -gCGGCUGGCCCGCGACUUUcucgGAG-GUc -3'
miRNA:   3'- ugGCCGACUGGGCGUUGAAG----UUCgCG- -5'
6675 3' -55.8 NC_001847.1 + 71478 0.76 0.360319
Target:  5'- cACCGGCUGAgCCCgGCAACgguggcggCGGuGCGCg -3'
miRNA:   3'- -UGGCCGACU-GGG-CGUUGaa------GUU-CGCG- -5'
6675 3' -55.8 NC_001847.1 + 92647 0.76 0.344473
Target:  5'- cCCGGCgguuucGCCCGCAgcGCUUC-GGCGCg -3'
miRNA:   3'- uGGCCGac----UGGGCGU--UGAAGuUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 36980 0.77 0.321656
Target:  5'- cGCCGGCgagcgGGCCCGCGccgaGCggCGgcGGCGCg -3'
miRNA:   3'- -UGGCCGa----CUGGGCGU----UGaaGU--UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 90023 0.77 0.321656
Target:  5'- cGCCGaGCUGcACCUGC-GCUUCGAGgGCc -3'
miRNA:   3'- -UGGC-CGAC-UGGGCGuUGAAGUUCgCG- -5'
6675 3' -55.8 NC_001847.1 + 115698 0.77 0.314305
Target:  5'- -gCGGCUGGCCCgGCAGCg---GGCGCg -3'
miRNA:   3'- ugGCCGACUGGG-CGUUGaaguUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 51084 0.77 0.314305
Target:  5'- cGCgGGCUGGucgaggaCCGCGACUUCAAgauGCGCg -3'
miRNA:   3'- -UGgCCGACUg------GGCGUUGAAGUU---CGCG- -5'
6675 3' -55.8 NC_001847.1 + 46602 0.77 0.307082
Target:  5'- cGCCGGCgcGGCCuCGCGGCgcaCGAGCGUg -3'
miRNA:   3'- -UGGCCGa-CUGG-GCGUUGaa-GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 34793 0.78 0.279465
Target:  5'- cGCgCGGCUacGACCCGCGGCcgCuGGCGCg -3'
miRNA:   3'- -UG-GCCGA--CUGGGCGUUGaaGuUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 132126 0.79 0.235946
Target:  5'- uGCuCGGCgcGGCCCGCGACgcggUgGAGCGCg -3'
miRNA:   3'- -UG-GCCGa-CUGGGCGUUGa---AgUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 23855 0.8 0.219104
Target:  5'- aGCCGGCUGGCCuCGCGcguaaaguGCUUUcgcAGCGCg -3'
miRNA:   3'- -UGGCCGACUGG-GCGU--------UGAAGu--UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 106095 0.8 0.208454
Target:  5'- gGCCGGCgagcacGGCgCGCAGCUcggCGAGCGCg -3'
miRNA:   3'- -UGGCCGa-----CUGgGCGUUGAa--GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 116888 1.1 0.002001
Target:  5'- gACCGGCUGACCCGCAACUUCAAGCGCc -3'
miRNA:   3'- -UGGCCGACUGGGCGUUGAAGUUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.