miRNA display CGI


Results 1 - 20 of 501 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 3' -55.8 NC_001847.1 + 129907 0.65 0.903073
Target:  5'- cCCGcGgaGACCUGCAcggagccaugcgcaGCUUCcgucgcGGCGCg -3'
miRNA:   3'- uGGC-CgaCUGGGCGU--------------UGAAGu-----UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 10167 0.66 0.8919
Target:  5'- aGCaGGCcGGCCCGCugcgccGGCUUUu-GCGCg -3'
miRNA:   3'- -UGgCCGaCUGGGCG------UUGAAGuuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 59113 0.66 0.889857
Target:  5'- cACCGGCaaGGCCaGCAcgaGCUUCcucuacaaccucaaGGGCGCc -3'
miRNA:   3'- -UGGCCGa-CUGGgCGU---UGAAG--------------UUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 86666 0.83 0.13483
Target:  5'- cGCCGcGCUcGACCCGC-GCUUUGAGCGCu -3'
miRNA:   3'- -UGGC-CGA-CUGGGCGuUGAAGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 2102 0.66 0.898555
Target:  5'- cGCgCGGCggcGGgCCGCGAUcUCGgccAGCGCc -3'
miRNA:   3'- -UG-GCCGa--CUgGGCGUUGaAGU---UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 58393 0.66 0.898555
Target:  5'- uGCCGGCgGGCa-GCAGCUcuUCGuaGGCGa -3'
miRNA:   3'- -UGGCCGaCUGggCGUUGA--AGU--UCGCg -5'
6675 3' -55.8 NC_001847.1 + 2990 0.66 0.898555
Target:  5'- gGCCGGCgcugGAgCCGCGcgcgcuccaccGCgucgCGGGcCGCg -3'
miRNA:   3'- -UGGCCGa---CUgGGCGU-----------UGaa--GUUC-GCG- -5'
6675 3' -55.8 NC_001847.1 + 7132 0.66 0.898555
Target:  5'- uGCCGGuCUuGCCCcCucccCUUCGGGCGUg -3'
miRNA:   3'- -UGGCC-GAcUGGGcGuu--GAAGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 112338 0.66 0.8919
Target:  5'- gGCCGccGCcGGCCCGCAuCUaCGAGCu- -3'
miRNA:   3'- -UGGC--CGaCUGGGCGUuGAaGUUCGcg -5'
6675 3' -55.8 NC_001847.1 + 60735 0.66 0.8919
Target:  5'- gUCGGC-GGCCCGCGcgcgcGCggCGGccGCGCg -3'
miRNA:   3'- uGGCCGaCUGGGCGU-----UGaaGUU--CGCG- -5'
6675 3' -55.8 NC_001847.1 + 62805 0.66 0.8919
Target:  5'- -aCGGCUu-CCUGCAGCacCAgcAGCGCg -3'
miRNA:   3'- ugGCCGAcuGGGCGUUGaaGU--UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 121877 0.66 0.8919
Target:  5'- gGCCGGCa---CCGCAgucaGCaUCAcGCGCa -3'
miRNA:   3'- -UGGCCGacugGGCGU----UGaAGUuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 100691 0.66 0.898555
Target:  5'- cGCCGGC-GGCcaCCGCGGCcUCGucCGCg -3'
miRNA:   3'- -UGGCCGaCUG--GGCGUUGaAGUucGCG- -5'
6675 3' -55.8 NC_001847.1 + 44638 0.66 0.8919
Target:  5'- cGCCaGCU--CCUGCAGCa-CAGGCGCc -3'
miRNA:   3'- -UGGcCGAcuGGGCGUUGaaGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 29056 0.66 0.898555
Target:  5'- cGCCGuGCUcgccGGCCgCGCGGCgcc-GGCGCc -3'
miRNA:   3'- -UGGC-CGA----CUGG-GCGUUGaaguUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 28381 0.66 0.8979
Target:  5'- cGCCGGa-GACggcgccccccccgCCGCGGCgccagcgCGGGCGCg -3'
miRNA:   3'- -UGGCCgaCUG-------------GGCGUUGaa-----GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 95988 0.66 0.8919
Target:  5'- -gCGGCUGcgcgGCCgGCAGCgauuUUCGagccccAGCGCg -3'
miRNA:   3'- ugGCCGAC----UGGgCGUUG----AAGU------UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 10561 0.66 0.891221
Target:  5'- gGCCGGCgccgGGCCCggcgccgGCGGCccccccgCGcGCGCg -3'
miRNA:   3'- -UGGCCGa---CUGGG-------CGUUGaa-----GUuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 3244 0.66 0.898555
Target:  5'- cGCCGuGCUcGCCgGCGGCag-GGGCGCc -3'
miRNA:   3'- -UGGC-CGAcUGGgCGUUGaagUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 36425 0.66 0.898555
Target:  5'- cCCGGCUucGGCCC-CGGCUUCGgccccGGCu- -3'
miRNA:   3'- uGGCCGA--CUGGGcGUUGAAGU-----UCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.