miRNA display CGI


Results 21 - 40 of 501 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 3' -55.8 NC_001847.1 + 85670 0.66 0.885011
Target:  5'- gGCCGuGCUGGCgCGCA------GGCGCu -3'
miRNA:   3'- -UGGC-CGACUGgGCGUugaaguUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 59113 0.66 0.889857
Target:  5'- cACCGGCaaGGCCaGCAcgaGCUUCcucuacaaccucaaGGGCGCc -3'
miRNA:   3'- -UGGCCGa-CUGGgCGU---UGAAG--------------UUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 121877 0.66 0.8919
Target:  5'- gGCCGGCa---CCGCAgucaGCaUCAcGCGCa -3'
miRNA:   3'- -UGGCCGacugGGCGU----UGaAGUuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 3244 0.66 0.898555
Target:  5'- cGCCGuGCUcGCCgGCGGCag-GGGCGCc -3'
miRNA:   3'- -UGGC-CGAcUGGgCGUUGaagUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 50056 0.66 0.877892
Target:  5'- gGCCGGC-GGCCUGCuggcGCUgaUCAuuggcaccGCGCc -3'
miRNA:   3'- -UGGCCGaCUGGGCGu---UGA--AGUu-------CGCG- -5'
6675 3' -55.8 NC_001847.1 + 99343 0.66 0.885011
Target:  5'- --gGGCUccaugGGCCCGCggUcgUCGAuGCGCg -3'
miRNA:   3'- uggCCGA-----CUGGGCGuuGa-AGUU-CGCG- -5'
6675 3' -55.8 NC_001847.1 + 10167 0.66 0.8919
Target:  5'- aGCaGGCcGGCCCGCugcgccGGCUUUu-GCGCg -3'
miRNA:   3'- -UGgCCGaCUGGGCG------UUGAAGuuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 29056 0.66 0.898555
Target:  5'- cGCCGuGCUcgccGGCCgCGCGGCgcc-GGCGCc -3'
miRNA:   3'- -UGGC-CGA----CUGG-GCGUUGaaguUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 30043 0.66 0.885011
Target:  5'- cCCGGC-GGCCCcgccgccgacgGCGGCUUCcgccGCGUg -3'
miRNA:   3'- uGGCCGaCUGGG-----------CGUUGAAGuu--CGCG- -5'
6675 3' -55.8 NC_001847.1 + 100691 0.66 0.898555
Target:  5'- cGCCGGC-GGCcaCCGCGGCcUCGucCGCg -3'
miRNA:   3'- -UGGCCGaCUG--GGCGUUGaAGUucGCG- -5'
6675 3' -55.8 NC_001847.1 + 10561 0.66 0.891221
Target:  5'- gGCCGGCgccgGGCCCggcgccgGCGGCccccccgCGcGCGCg -3'
miRNA:   3'- -UGGCCGa---CUGGG-------CGUUGaa-----GUuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 55403 0.66 0.885011
Target:  5'- cGCUGGC--GCUCGCcACgUUCAAGgGCa -3'
miRNA:   3'- -UGGCCGacUGGGCGuUG-AAGUUCgCG- -5'
6675 3' -55.8 NC_001847.1 + 44638 0.66 0.8919
Target:  5'- cGCCaGCU--CCUGCAGCa-CAGGCGCc -3'
miRNA:   3'- -UGGcCGAcuGGGCGUUGaaGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 112338 0.66 0.8919
Target:  5'- gGCCGccGCcGGCCCGCAuCUaCGAGCu- -3'
miRNA:   3'- -UGGC--CGaCUGGGCGUuGAaGUUCGcg -5'
6675 3' -55.8 NC_001847.1 + 2990 0.66 0.898555
Target:  5'- gGCCGGCgcugGAgCCGCGcgcgcuccaccGCgucgCGGGcCGCg -3'
miRNA:   3'- -UGGCCGa---CUgGGCGU-----------UGaa--GUUC-GCG- -5'
6675 3' -55.8 NC_001847.1 + 2102 0.66 0.898555
Target:  5'- cGCgCGGCggcGGgCCGCGAUcUCGgccAGCGCc -3'
miRNA:   3'- -UG-GCCGa--CUgGGCGUUGaAGU---UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 10240 0.66 0.877892
Target:  5'- cCCGGCgcgccugccgGGCCCGCuuuuCggagcCGAGUGCg -3'
miRNA:   3'- uGGCCGa---------CUGGGCGuu--Gaa---GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 30368 0.66 0.877892
Target:  5'- cGCUGGC-GGCgCCGCccGGCgaggaCGAGCGCc -3'
miRNA:   3'- -UGGCCGaCUG-GGCG--UUGaa---GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 4628 0.66 0.885011
Target:  5'- cGCgGGC-GGCCCGCcGGCgcUCGcGCGCc -3'
miRNA:   3'- -UGgCCGaCUGGGCG-UUGa-AGUuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 79572 0.66 0.885011
Target:  5'- --gGGCgccgGGCUCGCGGCcucUUCGGGCGg -3'
miRNA:   3'- uggCCGa---CUGGGCGUUG---AAGUUCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.