miRNA display CGI


Results 21 - 40 of 501 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 3' -55.8 NC_001847.1 + 129907 0.65 0.903073
Target:  5'- cCCGcGgaGACCUGCAcggagccaugcgcaGCUUCcgucgcGGCGCg -3'
miRNA:   3'- uGGC-CgaCUGGGCGU--------------UGAAGu-----UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 5277 0.66 0.885011
Target:  5'- uCCGGa-GACCCGgGgacggggguACggCGAGCGCg -3'
miRNA:   3'- uGGCCgaCUGGGCgU---------UGaaGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 66515 0.66 0.885011
Target:  5'- uUgGGCUGgaGCUgCGCGGCUggGGGCGCa -3'
miRNA:   3'- uGgCCGAC--UGG-GCGUUGAagUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 132982 0.66 0.885011
Target:  5'- cGCgGGCgcugcgaGACCUGguGCUgCGcAGCGCa -3'
miRNA:   3'- -UGgCCGa------CUGGGCguUGAaGU-UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 103281 0.66 0.8919
Target:  5'- cGCCGGCaGcaacGCCgGCGAgccCGGGCGCg -3'
miRNA:   3'- -UGGCCGaC----UGGgCGUUgaaGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 29008 0.66 0.877892
Target:  5'- gGCCGGC--GCCgGCGGCagCG-GCGCc -3'
miRNA:   3'- -UGGCCGacUGGgCGUUGaaGUuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 82836 0.66 0.884309
Target:  5'- cCCGGUUGgcgccGCCCGCGcccGCggUCGcgcacacaaagccGGCGCg -3'
miRNA:   3'- uGGCCGAC-----UGGGCGU---UGa-AGU-------------UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 7132 0.66 0.898555
Target:  5'- uGCCGGuCUuGCCCcCucccCUUCGGGCGUg -3'
miRNA:   3'- -UGGCC-GAcUGGGcGuu--GAAGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 46091 0.66 0.885011
Target:  5'- cGCCaGGCgcccGGCCCGCuuCcgCGGGgGCu -3'
miRNA:   3'- -UGG-CCGa---CUGGGCGuuGaaGUUCgCG- -5'
6675 3' -55.8 NC_001847.1 + 85670 0.66 0.885011
Target:  5'- gGCCGuGCUGGCgCGCA------GGCGCu -3'
miRNA:   3'- -UGGC-CGACUGgGCGUugaaguUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 36425 0.66 0.898555
Target:  5'- cCCGGCUucGGCCC-CGGCUUCGgccccGGCu- -3'
miRNA:   3'- uGGCCGA--CUGGGcGUUGAAGU-----UCGcg -5'
6675 3' -55.8 NC_001847.1 + 58393 0.66 0.898555
Target:  5'- uGCCGGCgGGCa-GCAGCUcuUCGuaGGCGa -3'
miRNA:   3'- -UGGCCGaCUGggCGUUGA--AGU--UCGCg -5'
6675 3' -55.8 NC_001847.1 + 45384 0.66 0.874982
Target:  5'- cGCCGGCgcgugcacGugCCGCAGCccgccaaaaaaggUCAAGaGCg -3'
miRNA:   3'- -UGGCCGa-------CugGGCGUUGa------------AGUUCgCG- -5'
6675 3' -55.8 NC_001847.1 + 28127 0.66 0.877892
Target:  5'- gGCCGGCgacguugGGCCCGagGACUgc-AGCGa -3'
miRNA:   3'- -UGGCCGa------CUGGGCg-UUGAaguUCGCg -5'
6675 3' -55.8 NC_001847.1 + 79572 0.66 0.885011
Target:  5'- --gGGCgccgGGCUCGCGGCcucUUCGGGCGg -3'
miRNA:   3'- uggCCGa---CUGGGCGUUG---AAGUUCGCg -5'
6675 3' -55.8 NC_001847.1 + 95988 0.66 0.8919
Target:  5'- -gCGGCUGcgcgGCCgGCAGCgauuUUCGagccccAGCGCg -3'
miRNA:   3'- ugGCCGAC----UGGgCGUUG----AAGU------UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 62805 0.66 0.8919
Target:  5'- -aCGGCUu-CCUGCAGCacCAgcAGCGCg -3'
miRNA:   3'- ugGCCGAcuGGGCGUUGaaGU--UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 2102 0.66 0.898555
Target:  5'- cGCgCGGCggcGGgCCGCGAUcUCGgccAGCGCc -3'
miRNA:   3'- -UG-GCCGa--CUgGGCGUUGaAGU---UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 105644 0.66 0.885011
Target:  5'- gGCCGaaGCgccGCCCGCGGCcggaGAGCGUg -3'
miRNA:   3'- -UGGC--CGac-UGGGCGUUGaag-UUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 39403 0.66 0.885011
Target:  5'- cGCCGGCcgGGCUCcuccgaaaGCAGCgagggGGGCGCg -3'
miRNA:   3'- -UGGCCGa-CUGGG--------CGUUGaag--UUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.