Results 21 - 40 of 501 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6675 | 3' | -55.8 | NC_001847.1 | + | 34026 | 0.66 | 0.875713 |
Target: 5'- cACCGcGCUGGgccaggcgaugggcCCCGCGGCgc---GCGCg -3' miRNA: 3'- -UGGC-CGACU--------------GGGCGUUGaaguuCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 135005 | 0.66 | 0.870549 |
Target: 5'- cCCGGCcggGGCCCGaGGCccgCGGGCGg -3' miRNA: 3'- uGGCCGa--CUGGGCgUUGaa-GUUCGCg -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 96545 | 0.66 | 0.877892 |
Target: 5'- cGCCGGCUG---UGCAGCcgCGcGCGCg -3' miRNA: 3'- -UGGCCGACuggGCGUUGaaGUuCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 130940 | 0.66 | 0.877892 |
Target: 5'- gGCCGGCgacguugGGCCCGagGACUgc-AGCGa -3' miRNA: 3'- -UGGCCGa------CUGGGCg-UUGAaguUCGCg -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 46405 | 0.66 | 0.8919 |
Target: 5'- -aUGGC-GGCCUGCuGCUuaUCGAGCaGCa -3' miRNA: 3'- ugGCCGaCUGGGCGuUGA--AGUUCG-CG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 132856 | 0.66 | 0.885011 |
Target: 5'- cCCGGC-GGCCCcgccgccgacgGCGGCUUCcgccGCGUg -3' miRNA: 3'- uGGCCGaCUGGG-----------CGUUGAAGuu--CGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 107441 | 0.66 | 0.885011 |
Target: 5'- cGCgGGC-GGCCCGCcGGCgcUCGcGCGCc -3' miRNA: 3'- -UGgCCGaCUGGGCG-UUGa-AGUuCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 5707 | 0.66 | 0.8919 |
Target: 5'- aGCCGcUUGGacacCCCGCAGCaggCGGGCGUc -3' miRNA: 3'- -UGGCcGACU----GGGCGUUGaa-GUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 30060 | 0.66 | 0.8919 |
Target: 5'- uGCCGGCgcgGuggCGCGGCUggGAGUGCu -3' miRNA: 3'- -UGGCCGa--CuggGCGUUGAagUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 80272 | 0.66 | 0.885011 |
Target: 5'- uGCCGGUauuuaACCCG--GCUUCGGcGCGCg -3' miRNA: 3'- -UGGCCGac---UGGGCguUGAAGUU-CGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 131821 | 0.66 | 0.877892 |
Target: 5'- gGCCGGC--GCCgGCGGCagCG-GCGCc -3' miRNA: 3'- -UGGCCGacUGGgCGUUGaaGUuCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 26295 | 0.66 | 0.8919 |
Target: 5'- -gCGGCaagUGACUCGCGGCgagUCGuggggcAGCGUc -3' miRNA: 3'- ugGCCG---ACUGGGCGUUGa--AGU------UCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 56814 | 0.66 | 0.877892 |
Target: 5'- -gCGGCgcccaagccgGGCCCGCGGCgc---GCGCg -3' miRNA: 3'- ugGCCGa---------CUGGGCGUUGaaguuCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 35719 | 0.66 | 0.885011 |
Target: 5'- cGCCGGagcugGACguggCCGCGguggagugGCUgcagCAAGCGCg -3' miRNA: 3'- -UGGCCga---CUG----GGCGU--------UGAa---GUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 90835 | 0.66 | 0.877168 |
Target: 5'- cACCGcucuggcGCUGGCCCGCcGCgcc--GCGCc -3' miRNA: 3'- -UGGC-------CGACUGGGCGuUGaaguuCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 78516 | 0.66 | 0.885011 |
Target: 5'- gGCCGGCUGcUCgCGCGGCUggugUCGccggaAGaCGCg -3' miRNA: 3'- -UGGCCGACuGG-GCGUUGA----AGU-----UC-GCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 63965 | 0.66 | 0.884309 |
Target: 5'- cGCCGGCgcugcgcGACacccuguUCGCGGCgcUCAAGUGCc -3' miRNA: 3'- -UGGCCGa------CUG-------GGCGUUGa-AGUUCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 48168 | 0.66 | 0.870549 |
Target: 5'- cGCCGGCccGGCCgGCGGCgUCcugcuGUGCc -3' miRNA: 3'- -UGGCCGa-CUGGgCGUUGaAGuu---CGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 112980 | 0.66 | 0.8919 |
Target: 5'- aGCaGGCcGGCCCGCugcgccGGCUUUu-GCGCg -3' miRNA: 3'- -UGgCCGaCUGGGCG------UUGAAGuuCGCG- -5' |
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6675 | 3' | -55.8 | NC_001847.1 | + | 42692 | 0.66 | 0.8919 |
Target: 5'- gACCGGCccugcgccgUGugUCGCAcgauugauGCUUaccGGCGCg -3' miRNA: 3'- -UGGCCG---------ACugGGCGU--------UGAAgu-UCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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