miRNA display CGI


Results 21 - 40 of 501 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 3' -55.8 NC_001847.1 + 48168 0.66 0.870549
Target:  5'- cGCCGGCccGGCCgGCGGCgUCcugcuGUGCc -3'
miRNA:   3'- -UGGCCGa-CUGGgCGUUGaAGuu---CGCG- -5'
6675 3' -55.8 NC_001847.1 + 5707 0.66 0.8919
Target:  5'- aGCCGcUUGGacacCCCGCAGCaggCGGGCGUc -3'
miRNA:   3'- -UGGCcGACU----GGGCGUUGaa-GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 33580 0.66 0.885011
Target:  5'- gGCCGuGCgcgGugCCGaCGACgUCcuGCGCc -3'
miRNA:   3'- -UGGC-CGa--CugGGC-GUUGaAGuuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 35719 0.66 0.885011
Target:  5'- cGCCGGagcugGACguggCCGCGguggagugGCUgcagCAAGCGCg -3'
miRNA:   3'- -UGGCCga---CUG----GGCGU--------UGAa---GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 80272 0.66 0.885011
Target:  5'- uGCCGGUauuuaACCCG--GCUUCGGcGCGCg -3'
miRNA:   3'- -UGGCCGac---UGGGCguUGAAGUU-CGCG- -5'
6675 3' -55.8 NC_001847.1 + 85239 0.66 0.877892
Target:  5'- --aGGC-GGCCgGCGGCgcCAGGUGCg -3'
miRNA:   3'- uggCCGaCUGGgCGUUGaaGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 132856 0.66 0.885011
Target:  5'- cCCGGC-GGCCCcgccgccgacgGCGGCUUCcgccGCGUg -3'
miRNA:   3'- uGGCCGaCUGGG-----------CGUUGAAGuu--CGCG- -5'
6675 3' -55.8 NC_001847.1 + 30060 0.66 0.8919
Target:  5'- uGCCGGCgcgGuggCGCGGCUggGAGUGCu -3'
miRNA:   3'- -UGGCCGa--CuggGCGUUGAagUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 30417 0.66 0.877892
Target:  5'- cGCCGGCaaGCUCGUGGCg---GGCGCg -3'
miRNA:   3'- -UGGCCGacUGGGCGUUGaaguUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 113053 0.66 0.877892
Target:  5'- cCCGGCgcgccugccgGGCCCGCuuuuCggagcCGAGUGCg -3'
miRNA:   3'- uGGCCGa---------CUGGGCGuu--Gaa---GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 135005 0.66 0.870549
Target:  5'- cCCGGCcggGGCCCGaGGCccgCGGGCGg -3'
miRNA:   3'- uGGCCGa--CUGGGCgUUGaa-GUUCGCg -5'
6675 3' -55.8 NC_001847.1 + 63965 0.66 0.884309
Target:  5'- cGCCGGCgcugcgcGACacccuguUCGCGGCgcUCAAGUGCc -3'
miRNA:   3'- -UGGCCGa------CUG-------GGCGUUGa-AGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 26295 0.66 0.8919
Target:  5'- -gCGGCaagUGACUCGCGGCgagUCGuggggcAGCGUc -3'
miRNA:   3'- ugGCCG---ACUGGGCGUUGa--AGU------UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 113374 0.66 0.891221
Target:  5'- gGCCGGCgccgGGCCCggcgccgGCGGCccccccgCGcGCGCg -3'
miRNA:   3'- -UGGCCGa---CUGGG-------CGUUGaa-----GUuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 30766 0.66 0.8919
Target:  5'- gGCCcGCUGcagcGCCgCGCGuCUgCGGGCGCg -3'
miRNA:   3'- -UGGcCGAC----UGG-GCGUuGAaGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 78516 0.66 0.885011
Target:  5'- gGCCGGCUGcUCgCGCGGCUggugUCGccggaAGaCGCg -3'
miRNA:   3'- -UGGCCGACuGG-GCGUUGA----AGU-----UC-GCG- -5'
6675 3' -55.8 NC_001847.1 + 120609 0.66 0.877892
Target:  5'- -aCGGC-GGCaCCGCGgGCagCGAGCGCc -3'
miRNA:   3'- ugGCCGaCUG-GGCGU-UGaaGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 77828 0.66 0.884309
Target:  5'- uGCCGGCcuuuuugcgccacUGGCCaGCGcGCUggGGGCGCu -3'
miRNA:   3'- -UGGCCG-------------ACUGGgCGU-UGAagUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 36088 0.66 0.8919
Target:  5'- cGCgCGGCUGGCggagCGCGGCgacgCGcugGGCGCc -3'
miRNA:   3'- -UG-GCCGACUGg---GCGUUGaa--GU---UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 130940 0.66 0.877892
Target:  5'- gGCCGGCgacguugGGCCCGagGACUgc-AGCGa -3'
miRNA:   3'- -UGGCCGa------CUGGGCg-UUGAaguUCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.