miRNA display CGI


Results 1 - 20 of 501 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 3' -55.8 NC_001847.1 + 129907 0.65 0.903073
Target:  5'- cCCGcGgaGACCUGCAcggagccaugcgcaGCUUCcgucgcGGCGCg -3'
miRNA:   3'- uGGC-CgaCUGGGCGU--------------UGAAGu-----UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 8092 0.65 0.902435
Target:  5'- -gCGGCgaGAUCgGCGACgcggcgccagcgCAGGCGCg -3'
miRNA:   3'- ugGCCGa-CUGGgCGUUGaa----------GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 4404 0.66 0.870549
Target:  5'- cGCCGccGUcGACgCCGaCGGCggCGAGCGCg -3'
miRNA:   3'- -UGGC--CGaCUG-GGC-GUUGaaGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 131821 0.66 0.877892
Target:  5'- gGCCGGC--GCCgGCGGCagCG-GCGCc -3'
miRNA:   3'- -UGGCCGacUGGgCGUUGaaGUuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 48168 0.66 0.870549
Target:  5'- cGCCGGCccGGCCgGCGGCgUCcugcuGUGCc -3'
miRNA:   3'- -UGGCCGa-CUGGgCGUUGaAGuu---CGCG- -5'
6675 3' -55.8 NC_001847.1 + 109740 0.66 0.870549
Target:  5'- aGCCccCUGGCCCGCAguGCUUCc-GCGg -3'
miRNA:   3'- -UGGccGACUGGGCGU--UGAAGuuCGCg -5'
6675 3' -55.8 NC_001847.1 + 113053 0.66 0.877892
Target:  5'- cCCGGCgcgccugccgGGCCCGCuuuuCggagcCGAGUGCg -3'
miRNA:   3'- uGGCCGa---------CUGGGCGuu--Gaa---GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 34026 0.66 0.875713
Target:  5'- cACCGcGCUGGgccaggcgaugggcCCCGCGGCgc---GCGCg -3'
miRNA:   3'- -UGGC-CGACU--------------GGGCGUUGaaguuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 56814 0.66 0.877892
Target:  5'- -gCGGCgcccaagccgGGCCCGCGGCgc---GCGCg -3'
miRNA:   3'- ugGCCGa---------CUGGGCGUUGaaguuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 130940 0.66 0.877892
Target:  5'- gGCCGGCgacguugGGCCCGagGACUgc-AGCGa -3'
miRNA:   3'- -UGGCCGa------CUGGGCg-UUGAaguUCGCg -5'
6675 3' -55.8 NC_001847.1 + 133181 0.66 0.877892
Target:  5'- cGCUGGC-GGCgCCGCccGGCgaggaCGAGCGCc -3'
miRNA:   3'- -UGGCCGaCUG-GGCG--UUGaa---GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 85239 0.66 0.877892
Target:  5'- --aGGC-GGCCgGCGGCgcCAGGUGCg -3'
miRNA:   3'- uggCCGaCUGGgCGUUGaaGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 96545 0.66 0.877892
Target:  5'- cGCCGGCUG---UGCAGCcgCGcGCGCg -3'
miRNA:   3'- -UGGCCGACuggGCGUUGaaGUuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 90835 0.66 0.877168
Target:  5'- cACCGcucuggcGCUGGCCCGCcGCgcc--GCGCc -3'
miRNA:   3'- -UGGC-------CGACUGGGCGuUGaaguuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 77828 0.66 0.884309
Target:  5'- uGCCGGCcuuuuugcgccacUGGCCaGCGcGCUggGGGCGCu -3'
miRNA:   3'- -UGGCCG-------------ACUGGgCGU-UGAagUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 30417 0.66 0.877892
Target:  5'- cGCCGGCaaGCUCGUGGCg---GGCGCg -3'
miRNA:   3'- -UGGCCGacUGGGCGUUGaaguUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 100854 0.66 0.877892
Target:  5'- gGCCGGagcgccGGCCCGCcgggggucGGCggCAggGGCGCg -3'
miRNA:   3'- -UGGCCga----CUGGGCG--------UUGaaGU--UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 135005 0.66 0.870549
Target:  5'- cCCGGCcggGGCCCGaGGCccgCGGGCGg -3'
miRNA:   3'- uGGCCGa--CUGGGCgUUGaa-GUUCGCg -5'
6675 3' -55.8 NC_001847.1 + 74390 0.66 0.870549
Target:  5'- cGCUGGggGACCgCGCGGCcgccgCGcGCGCg -3'
miRNA:   3'- -UGGCCgaCUGG-GCGUUGaa---GUuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 120609 0.66 0.877892
Target:  5'- -aCGGC-GGCaCCGCGgGCagCGAGCGCc -3'
miRNA:   3'- ugGCCGaCUG-GGCGU-UGaaGUUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.