miRNA display CGI


Results 1 - 20 of 501 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 3' -55.8 NC_001847.1 + 129907 0.65 0.903073
Target:  5'- cCCGcGgaGACCUGCAcggagccaugcgcaGCUUCcgucgcGGCGCg -3'
miRNA:   3'- uGGC-CgaCUGGGCGU--------------UGAAGu-----UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 8092 0.65 0.902435
Target:  5'- -gCGGCgaGAUCgGCGACgcggcgccagcgCAGGCGCg -3'
miRNA:   3'- ugGCCGa-CUGGgCGUUGaa----------GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 109945 0.66 0.898555
Target:  5'- uGCCGGuCUuGCCCcCucccCUUCGGGCGUg -3'
miRNA:   3'- -UGGCC-GAcUGGGcGuu--GAAGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 15577 0.66 0.898555
Target:  5'- gGCCGccGCUG-CCCGCAGagUCuggccGCGCg -3'
miRNA:   3'- -UGGC--CGACuGGGCGUUgaAGuu---CGCG- -5'
6675 3' -55.8 NC_001847.1 + 2102 0.66 0.898555
Target:  5'- cGCgCGGCggcGGgCCGCGAUcUCGgccAGCGCc -3'
miRNA:   3'- -UG-GCCGa--CUgGGCGUUGaAGU---UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 3244 0.66 0.898555
Target:  5'- cGCCGuGCUcGCCgGCGGCag-GGGCGCc -3'
miRNA:   3'- -UGGC-CGAcUGGgCGUUGaagUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 131869 0.66 0.898555
Target:  5'- cGCCGuGCUcgccGGCCgCGCGGCgcc-GGCGCc -3'
miRNA:   3'- -UGGC-CGA----CUGG-GCGUUGaaguUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 106057 0.66 0.898555
Target:  5'- cGCCGuGCUcGCCgGCGGCag-GGGCGCc -3'
miRNA:   3'- -UGGC-CGAcUGGgCGUUGaagUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 104915 0.66 0.898555
Target:  5'- cGCgCGGCggcGGgCCGCGAUcUCGgccAGCGCc -3'
miRNA:   3'- -UG-GCCGa--CUgGGCGUUGaAGU---UCGCG- -5'
6675 3' -55.8 NC_001847.1 + 33638 0.66 0.898555
Target:  5'- -gCGGCUGA-CCGCGAgg-CGcGCGCg -3'
miRNA:   3'- ugGCCGACUgGGCGUUgaaGUuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 37800 0.66 0.898555
Target:  5'- -gCGGCuguuUGACaCGCGGCcgggCGGGCGCg -3'
miRNA:   3'- ugGCCG----ACUGgGCGUUGaa--GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 18663 0.66 0.898555
Target:  5'- cGCCGuGCccGCCCGCGACgcugagCAGaaccGCGCc -3'
miRNA:   3'- -UGGC-CGacUGGGCGUUGaa----GUU----CGCG- -5'
6675 3' -55.8 NC_001847.1 + 36425 0.66 0.898555
Target:  5'- cCCGGCUucGGCCC-CGGCUUCGgccccGGCu- -3'
miRNA:   3'- uGGCCGA--CUGGGcGUUGAAGU-----UCGcg -5'
6675 3' -55.8 NC_001847.1 + 62708 0.66 0.898555
Target:  5'- gGCCGGCaGGCgCGUcACUcugagCAcGCGCa -3'
miRNA:   3'- -UGGCCGaCUGgGCGuUGAa----GUuCGCG- -5'
6675 3' -55.8 NC_001847.1 + 58393 0.66 0.898555
Target:  5'- uGCCGGCgGGCa-GCAGCUcuUCGuaGGCGa -3'
miRNA:   3'- -UGGCCGaCUGggCGUUGA--AGU--UCGCg -5'
6675 3' -55.8 NC_001847.1 + 29056 0.66 0.898555
Target:  5'- cGCCGuGCUcgccGGCCgCGCGGCgcc-GGCGCc -3'
miRNA:   3'- -UGGC-CGA----CUGG-GCGUUGaaguUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 53363 0.66 0.898555
Target:  5'- uGCUGGC-GGCCgCGgGcACcgCGAGCGCg -3'
miRNA:   3'- -UGGCCGaCUGG-GCgU-UGaaGUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 56065 0.66 0.898555
Target:  5'- cGCC-GCUGaaGCCUGCGcgGCU--GAGCGCg -3'
miRNA:   3'- -UGGcCGAC--UGGGCGU--UGAagUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 70448 0.66 0.898555
Target:  5'- uGCCGcGcCUGACgcaCUGCGACacgcgCGGGCGCc -3'
miRNA:   3'- -UGGC-C-GACUG---GGCGUUGaa---GUUCGCG- -5'
6675 3' -55.8 NC_001847.1 + 100691 0.66 0.898555
Target:  5'- cGCCGGC-GGCcaCCGCGGCcUCGucCGCg -3'
miRNA:   3'- -UGGCCGaCUG--GGCGUUGaAGUucGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.