miRNA display CGI


Results 41 - 60 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 5' -62.6 NC_001847.1 + 36560 0.66 0.557396
Target:  5'- gACGCGCUG-GcGCCGCGC-GCCUa-- -3'
miRNA:   3'- -UGCGCGGCuCuCGGCGUGuCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 28480 0.66 0.547638
Target:  5'- gACGCGCCGcGGAcGCCGC--GGCgCCGc- -3'
miRNA:   3'- -UGCGCGGC-UCU-CGGCGugUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 50105 0.66 0.52829
Target:  5'- cCGCGCCGGGcGgCGUAgAGCgCCGg- -3'
miRNA:   3'- uGCGCGGCUCuCgGCGUgUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 7007 0.66 0.541808
Target:  5'- aACGCGaCGAGcGGCCGCGCAuccgccagcgccagcGCCaCGUc -3'
miRNA:   3'- -UGCGCgGCUC-UCGGCGUGU---------------CGG-GCAu -5'
6675 5' -62.6 NC_001847.1 + 39405 0.66 0.52829
Target:  5'- cCGCGCCaGAGcGGcCCGCGCcGCCCc-- -3'
miRNA:   3'- uGCGCGG-CUC-UC-GGCGUGuCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 29439 0.66 0.557396
Target:  5'- -aGCGCUGGGGcGUgGCGCcGCCCGc- -3'
miRNA:   3'- ugCGCGGCUCU-CGgCGUGuCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 35961 0.66 0.557396
Target:  5'- cGCGCGaggaccaCGAGGGCgccaaggcgCGCGCAGCCgCGc- -3'
miRNA:   3'- -UGCGCg------GCUCUCG---------GCGUGUCGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 130154 0.66 0.537934
Target:  5'- cGCGCuuuGCCGc-GGCCGcCGCAGCCCc-- -3'
miRNA:   3'- -UGCG---CGGCucUCGGC-GUGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 50970 0.66 0.567203
Target:  5'- cACGaCGCCcAGucGGCgGCGCAGCUCGa- -3'
miRNA:   3'- -UGC-GCGGcUC--UCGgCGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 30151 0.66 0.537934
Target:  5'- gGCGCGCCGuGcGCC-CugGGUgCGUGg -3'
miRNA:   3'- -UGCGCGGCuCuCGGcGugUCGgGCAU- -5'
6675 5' -62.6 NC_001847.1 + 110192 0.66 0.577054
Target:  5'- uGCGCcaccuGCCGGGcaAGCCGCcGCAGCUgcUGUAc -3'
miRNA:   3'- -UGCG-----CGGCUC--UCGGCG-UGUCGG--GCAU- -5'
6675 5' -62.6 NC_001847.1 + 121448 0.66 0.567203
Target:  5'- cCGcCGCCGGGuuguuaaaugGGUcuCGCGCGGCUCGUGg -3'
miRNA:   3'- uGC-GCGGCUC----------UCG--GCGUGUCGGGCAU- -5'
6675 5' -62.6 NC_001847.1 + 70304 0.66 0.537934
Target:  5'- gGCGCGCCGcgcuggucucGGAGCUGaagcGCCCGg- -3'
miRNA:   3'- -UGCGCGGC----------UCUCGGCguguCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 39486 0.66 0.52829
Target:  5'- cCGCGCCaGAGcGGcCCGCGCcGCCCc-- -3'
miRNA:   3'- uGCGCGG-CUC-UC-GGCGUGuCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 132071 0.66 0.537934
Target:  5'- uGCGCGCCGGacgcgcuGGCgGCGCA-CCCGg- -3'
miRNA:   3'- -UGCGCGGCUc------UCGgCGUGUcGGGCau -5'
6675 5' -62.6 NC_001847.1 + 61453 0.66 0.547638
Target:  5'- cACGCGCCG--GGCCGCGCcuucaucgauGGCgCGg- -3'
miRNA:   3'- -UGCGCGGCucUCGGCGUG----------UCGgGCau -5'
6675 5' -62.6 NC_001847.1 + 93077 0.66 0.537934
Target:  5'- gAUGCGCCGc-AGCgGCAcCAGCCCc-- -3'
miRNA:   3'- -UGCGCGGCucUCGgCGU-GUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 39432 0.66 0.52829
Target:  5'- cCGCGCCaGAGcGGcCCGCGCcGCCCc-- -3'
miRNA:   3'- uGCGCGG-CUC-UC-GGCGUGuCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 18711 0.66 0.567203
Target:  5'- -aGCGCCcaccgcccucGAGCCcaagcGCGCGGCCCGg- -3'
miRNA:   3'- ugCGCGGcu--------CUCGG-----CGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 133520 0.66 0.537934
Target:  5'- uGCGCGCCGcggugcugccgcGGcgcagugcGCCGCGCgcuGGCCCGa- -3'
miRNA:   3'- -UGCGCGGC------------UCu-------CGGCGUG---UCGGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.