miRNA display CGI


Results 21 - 40 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 5' -62.6 NC_001847.1 + 29439 0.66 0.557396
Target:  5'- -aGCGCUGGGGcGUgGCGCcGCCCGc- -3'
miRNA:   3'- ugCGCGGCUCU-CGgCGUGuCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 84156 0.66 0.547638
Target:  5'- cGCGCGCCGGGGaCCuCGUAGCCCu-- -3'
miRNA:   3'- -UGCGCGGCUCUcGGcGUGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 105873 0.66 0.537934
Target:  5'- cGCGCuCCGGGugcGCCGC-CAGCgCGUc -3'
miRNA:   3'- -UGCGcGGCUCu--CGGCGuGUCGgGCAu -5'
6675 5' -62.6 NC_001847.1 + 130154 0.66 0.537934
Target:  5'- cGCGCuuuGCCGc-GGCCGcCGCAGCCCc-- -3'
miRNA:   3'- -UGCG---CGGCucUCGGC-GUGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 93077 0.66 0.537934
Target:  5'- gAUGCGCCGc-AGCgGCAcCAGCCCc-- -3'
miRNA:   3'- -UGCGCGGCucUCGgCGU-GUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 46755 0.66 0.547638
Target:  5'- gGCGCGCCcgcccGCCGCGCggGGCCgGUc -3'
miRNA:   3'- -UGCGCGGcucu-CGGCGUG--UCGGgCAu -5'
6675 5' -62.6 NC_001847.1 + 132011 0.66 0.544721
Target:  5'- gGCGcCGCCGGGcucccggugcucucGGCCGCggcgggccGCGGCCUGc- -3'
miRNA:   3'- -UGC-GCGGCUC--------------UCGGCG--------UGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 122833 0.66 0.537934
Target:  5'- gGCGCGCCcaccGGGcCCGCGCccuGGCuuGUGg -3'
miRNA:   3'- -UGCGCGGcu--CUC-GGCGUG---UCGggCAU- -5'
6675 5' -62.6 NC_001847.1 + 28480 0.66 0.547638
Target:  5'- gACGCGCCGcGGAcGCCGC--GGCgCCGc- -3'
miRNA:   3'- -UGCGCGGC-UCU-CGGCGugUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 39405 0.66 0.52829
Target:  5'- cCGCGCCaGAGcGGcCCGCGCcGCCCc-- -3'
miRNA:   3'- uGCGCGG-CUC-UC-GGCGUGuCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 113007 0.66 0.537934
Target:  5'- uGCGCGCCGcc-GCCGCcGCcgGGCCCa-- -3'
miRNA:   3'- -UGCGCGGCucuCGGCG-UG--UCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 60997 0.66 0.557396
Target:  5'- gGCGcCGUCGAG-GCCGCcauCGGCgCCGc- -3'
miRNA:   3'- -UGC-GCGGCUCuCGGCGu--GUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 50105 0.66 0.52829
Target:  5'- cCGCGCCGGGcGgCGUAgAGCgCCGg- -3'
miRNA:   3'- uGCGCGGCUCuCgGCGUgUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 33656 0.66 0.557396
Target:  5'- cGCGCGCgCGuG-GCCGC--GGCCCGc- -3'
miRNA:   3'- -UGCGCG-GCuCuCGGCGugUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 36560 0.66 0.557396
Target:  5'- gACGCGCUG-GcGCCGCGC-GCCUa-- -3'
miRNA:   3'- -UGCGCGGCuCuCGGCGUGuCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 21884 0.66 0.557396
Target:  5'- cGCGCuGCCGAG-GCCG---AGCCCGc- -3'
miRNA:   3'- -UGCG-CGGCUCuCGGCgugUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 7007 0.66 0.541808
Target:  5'- aACGCGaCGAGcGGCCGCGCAuccgccagcgccagcGCCaCGUc -3'
miRNA:   3'- -UGCGCgGCUC-UCGGCGUGU---------------CGG-GCAu -5'
6675 5' -62.6 NC_001847.1 + 5886 0.66 0.529251
Target:  5'- uGCGCGCaGGGcGGCCGCGCcgucgcagauugugcGCCCGg- -3'
miRNA:   3'- -UGCGCGgCUC-UCGGCGUGu--------------CGGGCau -5'
6675 5' -62.6 NC_001847.1 + 35961 0.66 0.557396
Target:  5'- cGCGCGaggaccaCGAGGGCgccaaggcgCGCGCAGCCgCGc- -3'
miRNA:   3'- -UGCGCg------GCUCUCG---------GCGUGUCGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 61453 0.66 0.547638
Target:  5'- cACGCGCCG--GGCCGCGCcuucaucgauGGCgCGg- -3'
miRNA:   3'- -UGCGCGGCucUCGGCGUG----------UCGgGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.