Results 21 - 40 of 554 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6675 | 5' | -62.6 | NC_001847.1 | + | 22104 | 0.77 | 0.120948 |
Target: 5'- gGCGCGCCGGGGGCgacagcgggCGCGCccugGGCCCGg- -3' miRNA: 3'- -UGCGCGGCUCUCG---------GCGUG----UCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 72605 | 0.77 | 0.120948 |
Target: 5'- aACGCGCUGcuGGCCGCACGgcacgugccGCCCGUGc -3' miRNA: 3'- -UGCGCGGCucUCGGCGUGU---------CGGGCAU- -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 34184 | 0.77 | 0.124058 |
Target: 5'- uGCGgGCCGGGGGCgCGCACGucccGCCCGa- -3' miRNA: 3'- -UGCgCGGCUCUCG-GCGUGU----CGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 115690 | 0.76 | 0.130501 |
Target: 5'- uGCGCGggggCGAGAGCCgGCuGCGGCCCGUGu -3' miRNA: 3'- -UGCGCg---GCUCUCGG-CG-UGUCGGGCAU- -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 131255 | 0.76 | 0.131826 |
Target: 5'- cGCGCGCaacggcucgcuccgcUGGGAGCUGCGCAGCCCc-- -3' miRNA: 3'- -UGCGCG---------------GCUCUCGGCGUGUCGGGcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 21510 | 0.76 | 0.137252 |
Target: 5'- gGCGCGCCucggcGGGGGCCGCGCGGgCCa-- -3' miRNA: 3'- -UGCGCGG-----CUCUCGGCGUGUCgGGcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 47691 | 0.76 | 0.140747 |
Target: 5'- cGCGCGCCGcGGGGCCGUugAGCgCGc- -3' miRNA: 3'- -UGCGCGGC-UCUCGGCGugUCGgGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 48499 | 0.76 | 0.140747 |
Target: 5'- gGCGCGCuCcGGGGCgGCGCGGCCCGc- -3' miRNA: 3'- -UGCGCG-GcUCUCGgCGUGUCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 44600 | 0.76 | 0.147981 |
Target: 5'- cGCGCGgCGAGGGCCGCcAgGGCgCCGUu -3' miRNA: 3'- -UGCGCgGCUCUCGGCG-UgUCG-GGCAu -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 120329 | 0.75 | 0.159468 |
Target: 5'- cGCGCGCaGGGcGCCGCGCAGCuCCGc- -3' miRNA: 3'- -UGCGCGgCUCuCGGCGUGUCG-GGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 77853 | 0.75 | 0.159468 |
Target: 5'- aGCGCGCUGGGGG-CGCucuCGGCCCGg- -3' miRNA: 3'- -UGCGCGGCUCUCgGCGu--GUCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 14444 | 0.75 | 0.167568 |
Target: 5'- -gGCGCCGAGcgcgcGGCCGCGCuGCUCGg- -3' miRNA: 3'- ugCGCGGCUC-----UCGGCGUGuCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 63238 | 0.75 | 0.167568 |
Target: 5'- cGCGCGCCGGGuccGCCGCuGCAGCgCCa-- -3' miRNA: 3'- -UGCGCGGCUCu--CGGCG-UGUCG-GGcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 105843 | 0.75 | 0.167568 |
Target: 5'- cCGCGCCGAGcAGCUcgGCGGCCCGg- -3' miRNA: 3'- uGCGCGGCUC-UCGGcgUGUCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 3030 | 0.75 | 0.167568 |
Target: 5'- cCGCGCCGAGcAGCUcgGCGGCCCGg- -3' miRNA: 3'- uGCGCGGCUC-UCGGcgUGUCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 52515 | 0.75 | 0.171754 |
Target: 5'- aGCGCGC----GGCCGCGCGGCCCGg- -3' miRNA: 3'- -UGCGCGgcucUCGGCGUGUCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 132189 | 0.74 | 0.176034 |
Target: 5'- uGCGCGCCGAGgcGGCCGCcgcgcuggagGCGGCCgCGc- -3' miRNA: 3'- -UGCGCGGCUC--UCGGCG----------UGUCGG-GCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 94147 | 0.74 | 0.176034 |
Target: 5'- cACGaCGCCG-GAGCaggugaGCGCGGCCCGg- -3' miRNA: 3'- -UGC-GCGGCuCUCGg-----CGUGUCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 59507 | 0.74 | 0.176034 |
Target: 5'- gUGCGCCGAG-GCCGCAcCGGCuuGg- -3' miRNA: 3'- uGCGCGGCUCuCGGCGU-GUCGggCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 3377 | 0.74 | 0.176034 |
Target: 5'- cGCGCGCCGA--GCCGCGCaaAGCCCu-- -3' miRNA: 3'- -UGCGCGGCUcuCGGCGUG--UCGGGcau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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