miRNA display CGI


Results 21 - 40 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 5' -62.6 NC_001847.1 + 110192 0.66 0.577054
Target:  5'- uGCGCcaccuGCCGGGcaAGCCGCcGCAGCUgcUGUAc -3'
miRNA:   3'- -UGCG-----CGGCUC--UCGGCG-UGUCGG--GCAU- -5'
6675 5' -62.6 NC_001847.1 + 110686 0.66 0.577054
Target:  5'- uCGgGCCGuuuGGGCCGC-CAGaCCCa-- -3'
miRNA:   3'- uGCgCGGCu--CUCGGCGuGUC-GGGcau -5'
6675 5' -62.6 NC_001847.1 + 7379 0.66 0.577054
Target:  5'- uGCGCcaccuGCCGGGcaAGCCGCcGCAGCUgcUGUAc -3'
miRNA:   3'- -UGCG-----CGGCUC--UCGGCG-UGUCGG--GCAU- -5'
6675 5' -62.6 NC_001847.1 + 2877 0.66 0.577054
Target:  5'- gACGCGCgGGccGCCGCGCcGCgCGUc -3'
miRNA:   3'- -UGCGCGgCUcuCGGCGUGuCGgGCAu -5'
6675 5' -62.6 NC_001847.1 + 105690 0.66 0.577054
Target:  5'- gACGCGCgGGccGCCGCGCcGCgCGUc -3'
miRNA:   3'- -UGCGCGgCUcuCGGCGUGuCGgGCAu -5'
6675 5' -62.6 NC_001847.1 + 85794 0.66 0.576067
Target:  5'- uGCGCGUCGAGGGUgcgggcgCGUGCAGCgaCGg- -3'
miRNA:   3'- -UGCGCGGCUCUCG-------GCGUGUCGg-GCau -5'
6675 5' -62.6 NC_001847.1 + 101034 0.66 0.576067
Target:  5'- -gGCGCCGcAGGcuccgccGCCGCGCgAGCCaCGg- -3'
miRNA:   3'- ugCGCGGC-UCU-------CGGCGUG-UCGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 103200 0.66 0.574094
Target:  5'- cGCGCGCCGGaccgcgcuccgaccGAGaCCG-AgGGCCCGg- -3'
miRNA:   3'- -UGCGCGGCU--------------CUC-GGCgUgUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 387 0.66 0.574094
Target:  5'- cGCGCGCCGGaccgcgcuccgaccGAGaCCG-AgGGCCCGg- -3'
miRNA:   3'- -UGCGCGGCU--------------CUC-GGCgUgUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 83175 0.66 0.571139
Target:  5'- gGCGCacccagugcaucacuGCCGcGGGGUCGCGCGGCCg--- -3'
miRNA:   3'- -UGCG---------------CGGC-UCUCGGCGUGUCGGgcau -5'
6675 5' -62.6 NC_001847.1 + 13395 0.66 0.570154
Target:  5'- gGCGCGCCGcGGGCCcugggagaaagacggGCGCGccagcgcGCgCCGUGa -3'
miRNA:   3'- -UGCGCGGCuCUCGG---------------CGUGU-------CG-GGCAU- -5'
6675 5' -62.6 NC_001847.1 + 132143 0.66 0.567203
Target:  5'- gACGCGgUG-GAGCgCGCGCGGCuCCa-- -3'
miRNA:   3'- -UGCGCgGCuCUCG-GCGUGUCG-GGcau -5'
6675 5' -62.6 NC_001847.1 + 86094 0.66 0.567203
Target:  5'- cCGCgGCCGuGAGCUGCGCgccaccacGGCUCGc- -3'
miRNA:   3'- uGCG-CGGCuCUCGGCGUG--------UCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 105936 0.66 0.567203
Target:  5'- cCGCgGCCGAGAGCaccgggaGCccgGCGGCgCCGg- -3'
miRNA:   3'- uGCG-CGGCUCUCGg------CG---UGUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 34616 0.66 0.567203
Target:  5'- gGCGCGCCGAGGaaguccggcGCCuGCGCgccgAGgCCGa- -3'
miRNA:   3'- -UGCGCGGCUCU---------CGG-CGUG----UCgGGCau -5'
6675 5' -62.6 NC_001847.1 + 50970 0.66 0.567203
Target:  5'- cACGaCGCCcAGucGGCgGCGCAGCUCGa- -3'
miRNA:   3'- -UGC-GCGGcUC--UCGgCGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 89906 0.66 0.567203
Target:  5'- gGCGC-CCGAGGuuguGCCGCGCgaGGCCgCGc- -3'
miRNA:   3'- -UGCGcGGCUCU----CGGCGUG--UCGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 18711 0.66 0.567203
Target:  5'- -aGCGCCcaccgcccucGAGCCcaagcGCGCGGCCCGg- -3'
miRNA:   3'- ugCGCGGcu--------CUCGG-----CGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 77579 0.66 0.567203
Target:  5'- cCGCGCgGGccGAGCuCGCACGGCggcacCCGUu -3'
miRNA:   3'- uGCGCGgCU--CUCG-GCGUGUCG-----GGCAu -5'
6675 5' -62.6 NC_001847.1 + 121448 0.66 0.567203
Target:  5'- cCGcCGCCGGGuuguuaaaugGGUcuCGCGCGGCUCGUGg -3'
miRNA:   3'- uGC-GCGGCUC----------UCG--GCGUGUCGGGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.