miRNA display CGI


Results 21 - 40 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 5' -62.6 NC_001847.1 + 3030 0.75 0.167568
Target:  5'- cCGCGCCGAGcAGCUcgGCGGCCCGg- -3'
miRNA:   3'- uGCGCGGCUC-UCGGcgUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 3044 0.68 0.418801
Target:  5'- uGCGCGCCcAGcAGCCGCAgGcgcagguuguGCUCGUAg -3'
miRNA:   3'- -UGCGCGGcUC-UCGGCGUgU----------CGGGCAU- -5'
6675 5' -62.6 NC_001847.1 + 3060 0.66 0.537934
Target:  5'- cGCGCuCCGGGugcGCCGC-CAGCgCGUc -3'
miRNA:   3'- -UGCGcGGCUCu--CGGCGuGUCGgGCAu -5'
6675 5' -62.6 NC_001847.1 + 3123 0.66 0.567203
Target:  5'- cCGCgGCCGAGAGCaccgggaGCccgGCGGCgCCGg- -3'
miRNA:   3'- uGCG-CGGCUCUCGg------CG---UGUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 3277 0.72 0.246514
Target:  5'- cGCGCgGCCGGcGAGCacggCGCGCAGCUCGg- -3'
miRNA:   3'- -UGCG-CGGCU-CUCG----GCGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 3377 0.74 0.176034
Target:  5'- cGCGCGCCGA--GCCGCGCaaAGCCCu-- -3'
miRNA:   3'- -UGCGCGGCUcuCGGCGUG--UCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 3421 0.66 0.577054
Target:  5'- -aGC-CCGGGGGCgccagGCGCAGCCCa-- -3'
miRNA:   3'- ugCGcGGCUCUCGg----CGUGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 3483 0.8 0.068525
Target:  5'- gGCGCGCCGAGAGCuCGCACAugaGCCgCGc- -3'
miRNA:   3'- -UGCGCGGCUCUCG-GCGUGU---CGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 3725 0.69 0.393626
Target:  5'- cGCGCGCCGGccacGGCgCGCACGcGgCCGUGc -3'
miRNA:   3'- -UGCGCGGCUc---UCG-GCGUGU-CgGGCAU- -5'
6675 5' -62.6 NC_001847.1 + 3868 0.73 0.208721
Target:  5'- -gGCGCCG-GGGCUGCGCAGCUCc-- -3'
miRNA:   3'- ugCGCGGCuCUCGGCGUGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 3980 0.77 0.109221
Target:  5'- -gGCGCCGGGGGCCgggcGCGCGGCCCc-- -3'
miRNA:   3'- ugCGCGGCUCUCGG----CGUGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 4170 0.73 0.229664
Target:  5'- aGCGgGCCuuguuuuGGGCCGCGC-GCCCGUGg -3'
miRNA:   3'- -UGCgCGGcu-----CUCGGCGUGuCGGGCAU- -5'
6675 5' -62.6 NC_001847.1 + 4239 0.72 0.270559
Target:  5'- cGCGCGCCGGcacGAGCUGCgccaGCAGCCaGUc -3'
miRNA:   3'- -UGCGCGGCU---CUCGGCG----UGUCGGgCAu -5'
6675 5' -62.6 NC_001847.1 + 4432 0.69 0.361626
Target:  5'- cGCGCGCCGcAGGGaaaCGCGCAcgCCGUGa -3'
miRNA:   3'- -UGCGCGGC-UCUCg--GCGUGUcgGGCAU- -5'
6675 5' -62.6 NC_001847.1 + 5212 0.72 0.270559
Target:  5'- aGCGCGCCGcgacGGaAGCUGCGCAugGCuCCGUGc -3'
miRNA:   3'- -UGCGCGGC----UC-UCGGCGUGU--CG-GGCAU- -5'
6675 5' -62.6 NC_001847.1 + 5626 0.66 0.577054
Target:  5'- -gGCGCCGcGGucCCGCGCgcgccaaagAGCCCGUc -3'
miRNA:   3'- ugCGCGGC-UCucGGCGUG---------UCGGGCAu -5'
6675 5' -62.6 NC_001847.1 + 5680 0.67 0.499766
Target:  5'- cGCGCGgCGGcGGCCGC-CAGCUCa-- -3'
miRNA:   3'- -UGCGCgGCUcUCGGCGuGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 5681 0.68 0.462845
Target:  5'- gUGgGCCGgccGGGGCCGCcCAGaCCCGg- -3'
miRNA:   3'- uGCgCGGC---UCUCGGCGuGUC-GGGCau -5'
6675 5' -62.6 NC_001847.1 + 5821 0.68 0.453839
Target:  5'- gGCGCGCCGGGuG-CGUGCAGCaCCc-- -3'
miRNA:   3'- -UGCGCGGCUCuCgGCGUGUCG-GGcau -5'
6675 5' -62.6 NC_001847.1 + 5886 0.66 0.529251
Target:  5'- uGCGCGCaGGGcGGCCGCGCcgucgcagauugugcGCCCGg- -3'
miRNA:   3'- -UGCGCGgCUC-UCGGCGUGu--------------CGGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.