miRNA display CGI


Results 1 - 20 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 5' -62.6 NC_001847.1 + 5 0.68 0.418801
Target:  5'- cCGCGCCGc--GCCGCGCgGGCCCc-- -3'
miRNA:   3'- uGCGCGGCucuCGGCGUG-UCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 217 0.67 0.471945
Target:  5'- gGCGC-CCGGGGGCC-CG-AGCCCGg- -3'
miRNA:   3'- -UGCGcGGCUCUCGGcGUgUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 275 0.69 0.377398
Target:  5'- -aGC-CCGGGGGCCGCcgAGCCCGc- -3'
miRNA:   3'- ugCGcGGCUCUCGGCGugUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 387 0.66 0.574094
Target:  5'- cGCGCGCCGGaccgcgcuccgaccGAGaCCG-AgGGCCCGg- -3'
miRNA:   3'- -UGCGCGGCU--------------CUC-GGCgUgUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 585 0.69 0.374207
Target:  5'- -gGCGCCGGGuccuggcccuccgcGGCCGCuccgcagcggcgcGCGGCCCGc- -3'
miRNA:   3'- ugCGCGGCUC--------------UCGGCG-------------UGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 635 0.79 0.086626
Target:  5'- cAUGCGCCGc-GGCCGCACGGCCCa-- -3'
miRNA:   3'- -UGCGCGGCucUCGGCGUGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 890 0.73 0.229664
Target:  5'- cCGCGCCG-GGGCCGCcGCGGCCg--- -3'
miRNA:   3'- uGCGCGGCuCUCGGCG-UGUCGGgcau -5'
6675 5' -62.6 NC_001847.1 + 929 0.66 0.577054
Target:  5'- -gGCGCCGGGaAGCC-CG-AGCCCGc- -3'
miRNA:   3'- ugCGCGGCUC-UCGGcGUgUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 1264 0.68 0.462845
Target:  5'- gGCGCGCCGAGcccccagcgguuGGCgGCGCGGUggCUGg- -3'
miRNA:   3'- -UGCGCGGCUC------------UCGgCGUGUCG--GGCau -5'
6675 5' -62.6 NC_001847.1 + 1381 0.7 0.346318
Target:  5'- -aGCGCCGGcAGCaCGCGCuGCCgGUAc -3'
miRNA:   3'- ugCGCGGCUcUCG-GCGUGuCGGgCAU- -5'
6675 5' -62.6 NC_001847.1 + 1560 0.71 0.289806
Target:  5'- gACGCGCCGcGAgGCCaGCACGGCgCGc- -3'
miRNA:   3'- -UGCGCGGCuCU-CGG-CGUGUCGgGCau -5'
6675 5' -62.6 NC_001847.1 + 1591 0.67 0.471945
Target:  5'- aGCGCGCCGcucGGGCCagcGCGCGGCgCa-- -3'
miRNA:   3'- -UGCGCGGCu--CUCGG---CGUGUCGgGcau -5'
6675 5' -62.6 NC_001847.1 + 1788 0.72 0.264376
Target:  5'- cCGCGUCGAGAGCagcaGCAC-GCCCu-- -3'
miRNA:   3'- uGCGCGGCUCUCGg---CGUGuCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 1813 0.69 0.361626
Target:  5'- uGCGCGCCGAGcgcGCUcacguccgGCGC-GCCCGUc -3'
miRNA:   3'- -UGCGCGGCUCu--CGG--------CGUGuCGGGCAu -5'
6675 5' -62.6 NC_001847.1 + 1909 0.7 0.353914
Target:  5'- aGCGCGUgCGAGAGcCCGCcGCGGCgCGg- -3'
miRNA:   3'- -UGCGCG-GCUCUC-GGCG-UGUCGgGCau -5'
6675 5' -62.6 NC_001847.1 + 1943 0.66 0.52829
Target:  5'- cGCGCGgCGcAGAGCUccuccagcgaGgGCAGCCCGc- -3'
miRNA:   3'- -UGCGCgGC-UCUCGG----------CgUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 2585 0.7 0.346318
Target:  5'- uGCGCgGCCGccgcGGCCGCACgcgAGCCCGc- -3'
miRNA:   3'- -UGCG-CGGCuc--UCGGCGUG---UCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 2877 0.66 0.577054
Target:  5'- gACGCGCgGGccGCCGCGCcGCgCGUc -3'
miRNA:   3'- -UGCGCGgCUcuCGGCGUGuCGgGCAu -5'
6675 5' -62.6 NC_001847.1 + 2895 0.69 0.385456
Target:  5'- uGCGuCGCCGuucGGGCCGgACGGUCgGUGu -3'
miRNA:   3'- -UGC-GCGGCu--CUCGGCgUGUCGGgCAU- -5'
6675 5' -62.6 NC_001847.1 + 2994 0.68 0.453839
Target:  5'- -gGCGCUG-GAGCCGCGCGcGCuCCa-- -3'
miRNA:   3'- ugCGCGGCuCUCGGCGUGU-CG-GGcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.