miRNA display CGI


Results 1 - 20 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 5' -62.6 NC_001847.1 + 132189 0.74 0.176034
Target:  5'- uGCGCGCCGAGgcGGCCGCcgcgcuggagGCGGCCgCGc- -3'
miRNA:   3'- -UGCGCGGCUC--UCGGCG----------UGUCGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 34184 0.77 0.124058
Target:  5'- uGCGgGCCGGGGGCgCGCACGucccGCCCGa- -3'
miRNA:   3'- -UGCgCGGCUCUCG-GCGUGU----CGGGCau -5'
6675 5' -62.6 NC_001847.1 + 21510 0.76 0.137252
Target:  5'- gGCGCGCCucggcGGGGGCCGCGCGGgCCa-- -3'
miRNA:   3'- -UGCGCGG-----CUCUCGGCGUGUCgGGcau -5'
6675 5' -62.6 NC_001847.1 + 48499 0.76 0.140747
Target:  5'- gGCGCGCuCcGGGGCgGCGCGGCCCGc- -3'
miRNA:   3'- -UGCGCG-GcUCUCGgCGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 77853 0.75 0.159468
Target:  5'- aGCGCGCUGGGGG-CGCucuCGGCCCGg- -3'
miRNA:   3'- -UGCGCGGCUCUCgGCGu--GUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 14444 0.75 0.167568
Target:  5'- -gGCGCCGAGcgcgcGGCCGCGCuGCUCGg- -3'
miRNA:   3'- ugCGCGGCUC-----UCGGCGUGuCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 105843 0.75 0.167568
Target:  5'- cCGCGCCGAGcAGCUcgGCGGCCCGg- -3'
miRNA:   3'- uGCGCGGCUC-UCGGcgUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 52515 0.75 0.171754
Target:  5'- aGCGCGC----GGCCGCGCGGCCCGg- -3'
miRNA:   3'- -UGCGCGgcucUCGGCGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 59507 0.74 0.176034
Target:  5'- gUGCGCCGAG-GCCGCAcCGGCuuGg- -3'
miRNA:   3'- uGCGCGGCUCuCGGCGU-GUCGggCau -5'
6675 5' -62.6 NC_001847.1 + 124917 0.77 0.120948
Target:  5'- gGCGCGCCGGGGGCgacagcgggCGCGCccugGGCCCGg- -3'
miRNA:   3'- -UGCGCGGCUCUCG---------GCGUG----UCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 72605 0.77 0.120948
Target:  5'- aACGCGCUGcuGGCCGCACGgcacgugccGCCCGUGc -3'
miRNA:   3'- -UGCGCGGCucUCGGCGUGU---------CGGGCAU- -5'
6675 5' -62.6 NC_001847.1 + 106792 0.77 0.120948
Target:  5'- -gGCGCCGGGGGCCcgggcGCGCGGCCCc-- -3'
miRNA:   3'- ugCGCGGCUCUCGG-----CGUGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 30212 0.83 0.0474
Target:  5'- cGCGCGCCGA-AGCCGCGCGcGCCCGg- -3'
miRNA:   3'- -UGCGCGGCUcUCGGCGUGU-CGGGCau -5'
6675 5' -62.6 NC_001847.1 + 64880 0.81 0.057022
Target:  5'- cGCGCGCCGAGAgcaacGCCGCGC-GCCCGc- -3'
miRNA:   3'- -UGCGCGGCUCU-----CGGCGUGuCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 3483 0.8 0.068525
Target:  5'- gGCGCGCCGAGAGCuCGCACAugaGCCgCGc- -3'
miRNA:   3'- -UGCGCGGCUCUCG-GCGUGU---CGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 635 0.79 0.086626
Target:  5'- cAUGCGCCGc-GGCCGCACGGCCCa-- -3'
miRNA:   3'- -UGCGCGGCucUCGGCGUGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 132807 0.79 0.091228
Target:  5'- gGCGCGgCGGGAGCCGcCGCuGCCCGc- -3'
miRNA:   3'- -UGCGCgGCUCUCGGC-GUGuCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 97453 0.78 0.101134
Target:  5'- cGCGCGCCGcagccgcgccAGGGCCGCGCgcuaAGCCCGc- -3'
miRNA:   3'- -UGCGCGGC----------UCUCGGCGUG----UCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 131865 0.77 0.112049
Target:  5'- uGCGCGCCGuGcucgccGGCCGCGCGGCgCCGg- -3'
miRNA:   3'- -UGCGCGGCuC------UCGGCGUGUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 34658 0.77 0.117911
Target:  5'- gGCGCGCCGAGggggcGGCCGCGCAGCg---- -3'
miRNA:   3'- -UGCGCGGCUC-----UCGGCGUGUCGggcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.