Results 1 - 20 of 554 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6675 | 5' | -62.6 | NC_001847.1 | + | 39851 | 0.65 | 0.583972 |
Target: 5'- cGCGCGCC-AGccGCCGguaggcuucguccaCGCGGCCCGg- -3' miRNA: 3'- -UGCGCGGcUCu-CGGC--------------GUGUCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 41835 | 0.66 | 0.567203 |
Target: 5'- gGCGCGCCuacacacGCgCGCGCGGCCUGc- -3' miRNA: 3'- -UGCGCGGcucu---CG-GCGUGUCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 29330 | 0.66 | 0.567203 |
Target: 5'- gACGCGgUG-GAGCgCGCGCGGCuCCa-- -3' miRNA: 3'- -UGCGCgGCuCUCG-GCGUGUCG-GGcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 102447 | 0.88 | 0.019127 |
Target: 5'- aGCGCGCCGAGAcggcGCCGCACAGCUCGa- -3' miRNA: 3'- -UGCGCGGCUCU----CGGCGUGUCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 58082 | 0.66 | 0.577054 |
Target: 5'- cGCGCGCCGcagcgGGuGCCGCGCcGCUa--- -3' miRNA: 3'- -UGCGCGGC-----UCuCGGCGUGuCGGgcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 30138 | 0.66 | 0.577054 |
Target: 5'- cCGCcCCGAGGucGCgGCGCGGCUCGc- -3' miRNA: 3'- uGCGcGGCUCU--CGgCGUGUCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 91890 | 0.66 | 0.577054 |
Target: 5'- gUGCcccCCGGGcGCCGCGCcGCCCGc- -3' miRNA: 3'- uGCGc--GGCUCuCGGCGUGuCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 7873 | 0.66 | 0.577054 |
Target: 5'- uCGgGCCGuuuGGGCCGC-CAGaCCCa-- -3' miRNA: 3'- uGCgCGGCu--CUCGGCGuGUC-GGGcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 101034 | 0.66 | 0.576067 |
Target: 5'- -gGCGCCGcAGGcuccgccGCCGCGCgAGCCaCGg- -3' miRNA: 3'- ugCGCGGC-UCU-------CGGCGUG-UCGG-GCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 46238 | 0.66 | 0.567203 |
Target: 5'- cGCGCGCgcaaGGGAGCCGCc---CCCGg- -3' miRNA: 3'- -UGCGCGg---CUCUCGGCGugucGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 83175 | 0.66 | 0.571139 |
Target: 5'- gGCGCacccagugcaucacuGCCGcGGGGUCGCGCGGCCg--- -3' miRNA: 3'- -UGCG---------------CGGC-UCUCGGCGUGUCGGgcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 929 | 0.66 | 0.577054 |
Target: 5'- -gGCGCCGGGaAGCC-CG-AGCCCGc- -3' miRNA: 3'- ugCGCGGCUC-UCGGcGUgUCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 121650 | 0.66 | 0.577054 |
Target: 5'- gGCGCGCacuucgcgGAaGGCCGCcgcugugggguGCGGCCCGa- -3' miRNA: 3'- -UGCGCGg-------CUcUCGGCG-----------UGUCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 13395 | 0.66 | 0.570154 |
Target: 5'- gGCGCGCCGcGGGCCcugggagaaagacggGCGCGccagcgcGCgCCGUGa -3' miRNA: 3'- -UGCGCGGCuCUCGG---------------CGUGU-------CG-GGCAU- -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 73251 | 0.66 | 0.577054 |
Target: 5'- gGCGCGCuCGAG-GCCGUGCGcGCacgCCGa- -3' miRNA: 3'- -UGCGCG-GCUCuCGGCGUGU-CG---GGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 7379 | 0.66 | 0.577054 |
Target: 5'- uGCGCcaccuGCCGGGcaAGCCGCcGCAGCUgcUGUAc -3' miRNA: 3'- -UGCG-----CGGCUC--UCGGCG-UGUCGG--GCAU- -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 86094 | 0.66 | 0.567203 |
Target: 5'- cCGCgGCCGuGAGCUGCGCgccaccacGGCUCGc- -3' miRNA: 3'- uGCG-CGGCuCUCGGCGUG--------UCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 34302 | 0.66 | 0.567203 |
Target: 5'- gGCGCuccggcccugGCCG-GAGCCGCcCGGgCCGa- -3' miRNA: 3'- -UGCG----------CGGCuCUCGGCGuGUCgGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 63193 | 0.66 | 0.577054 |
Target: 5'- cCGCGCCacGAcGuGCgGCGCGGCgCCGUu -3' miRNA: 3'- uGCGCGG--CU-CuCGgCGUGUCG-GGCAu -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 2877 | 0.66 | 0.577054 |
Target: 5'- gACGCGCgGGccGCCGCGCcGCgCGUc -3' miRNA: 3'- -UGCGCGgCUcuCGGCGUGuCGgGCAu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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