miRNA display CGI


Results 1 - 20 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 5' -62.6 NC_001847.1 + 116923 1.05 0.001032
Target:  5'- cACGCGCCGAGAGCCGCACAGCCCGUAc -3'
miRNA:   3'- -UGCGCGGCUCUCGGCGUGUCGGGCAU- -5'
6675 5' -62.6 NC_001847.1 + 102447 0.88 0.019127
Target:  5'- aGCGCGCCGAGAcggcGCCGCACAGCUCGa- -3'
miRNA:   3'- -UGCGCGGCUCU----CGGCGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 30212 0.83 0.0474
Target:  5'- cGCGCGCCGA-AGCCGCGCGcGCCCGg- -3'
miRNA:   3'- -UGCGCGGCUcUCGGCGUGU-CGGGCau -5'
6675 5' -62.6 NC_001847.1 + 64880 0.81 0.057022
Target:  5'- cGCGCGCCGAGAgcaacGCCGCGC-GCCCGc- -3'
miRNA:   3'- -UGCGCGGCUCU-----CGGCGUGuCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 101346 0.81 0.065028
Target:  5'- aGCGCGCCGGGcGCCGCgcGCAGCCCc-- -3'
miRNA:   3'- -UGCGCGGCUCuCGGCG--UGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 3483 0.8 0.068525
Target:  5'- gGCGCGCCGAGAGCuCGCACAugaGCCgCGc- -3'
miRNA:   3'- -UGCGCGGCUCUCG-GCGUGU---CGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 120551 0.79 0.085956
Target:  5'- cGCGCGCCagacggcguccuuaGAGAGCCGCGC-GCCCGc- -3'
miRNA:   3'- -UGCGCGG--------------CUCUCGGCGUGuCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 635 0.79 0.086626
Target:  5'- cAUGCGCCGc-GGCCGCACGGCCCa-- -3'
miRNA:   3'- -UGCGCGGCucUCGGCGUGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 132807 0.79 0.091228
Target:  5'- gGCGCGgCGGGAGCCGcCGCuGCCCGc- -3'
miRNA:   3'- -UGCGCgGCUCUCGGC-GUGuCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 113763 0.79 0.091228
Target:  5'- uCGuCGCUGAGAGCCGCccgagGCGGCCCGa- -3'
miRNA:   3'- uGC-GCGGCUCUCGGCG-----UGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 29994 0.79 0.091228
Target:  5'- gGCGCGgCGGGAGCCGcCGCuGCCCGc- -3'
miRNA:   3'- -UGCGCgGCUCUCGGC-GUGuCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 97453 0.78 0.101134
Target:  5'- cGCGCGCCGcagccgcgccAGGGCCGCGCgcuaAGCCCGc- -3'
miRNA:   3'- -UGCGCGGC----------UCUCGGCGUG----UCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 116928 0.78 0.103765
Target:  5'- cACGacCGCCGAGAGaCCGC-CAGCCCGa- -3'
miRNA:   3'- -UGC--GCGGCUCUC-GGCGuGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 3980 0.77 0.109221
Target:  5'- -gGCGCCGGGGGCCgggcGCGCGGCCCc-- -3'
miRNA:   3'- ugCGCGGCUCUCGG----CGUGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 29052 0.77 0.112049
Target:  5'- uGCGCGCCGuGcucgccGGCCGCGCGGCgCCGg- -3'
miRNA:   3'- -UGCGCGGCuC------UCGGCGUGUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 131865 0.77 0.112049
Target:  5'- uGCGCGCCGuGcucgccGGCCGCGCGGCgCCGg- -3'
miRNA:   3'- -UGCGCGGCuC------UCGGCGUGUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 80556 0.77 0.114945
Target:  5'- cGCGCGCCGccAGcGCCGCcCAGCCCGc- -3'
miRNA:   3'- -UGCGCGGC--UCuCGGCGuGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 34658 0.77 0.117911
Target:  5'- gGCGCGCCGAGggggcGGCCGCGCAGCg---- -3'
miRNA:   3'- -UGCGCGGCUC-----UCGGCGUGUCGggcau -5'
6675 5' -62.6 NC_001847.1 + 106792 0.77 0.120948
Target:  5'- -gGCGCCGGGGGCCcgggcGCGCGGCCCc-- -3'
miRNA:   3'- ugCGCGGCUCUCGG-----CGUGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 22104 0.77 0.120948
Target:  5'- gGCGCGCCGGGGGCgacagcgggCGCGCccugGGCCCGg- -3'
miRNA:   3'- -UGCGCGGCUCUCG---------GCGUG----UCGGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.