miRNA display CGI


Results 1 - 20 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 5' -62.6 NC_001847.1 + 39851 0.65 0.583972
Target:  5'- cGCGCGCC-AGccGCCGguaggcuucguccaCGCGGCCCGg- -3'
miRNA:   3'- -UGCGCGGcUCu-CGGC--------------GUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 110755 0.65 0.583972
Target:  5'- cGCGCGCCGcgccGGAGuUCGCGCaugcggguuuuuagGGCCCu-- -3'
miRNA:   3'- -UGCGCGGC----UCUC-GGCGUG--------------UCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 60236 0.66 0.537934
Target:  5'- uCGuCGgCGAGGGCUaGCACGGCgCCGa- -3'
miRNA:   3'- uGC-GCgGCUCUCGG-CGUGUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 134903 0.66 0.537934
Target:  5'- -gGCGCCGGGcgucgGGgCGCGaGGCCCGg- -3'
miRNA:   3'- ugCGCGGCUC-----UCgGCGUgUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 90199 0.66 0.537934
Target:  5'- gGCGCGCC----GUCGCcCAGCCCGa- -3'
miRNA:   3'- -UGCGCGGcucuCGGCGuGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 78986 0.66 0.537934
Target:  5'- gGCGUGCuCGGGcGGCUGCugAGCCa--- -3'
miRNA:   3'- -UGCGCG-GCUC-UCGGCGugUCGGgcau -5'
6675 5' -62.6 NC_001847.1 + 39432 0.66 0.52829
Target:  5'- cCGCGCCaGAGcGGcCCGCGCcGCCCc-- -3'
miRNA:   3'- uGCGCGG-CUC-UC-GGCGUGuCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 5886 0.66 0.529251
Target:  5'- uGCGCGCaGGGcGGCCGCGCcgucgcagauugugcGCCCGg- -3'
miRNA:   3'- -UGCGCGgCUC-UCGGCGUGu--------------CGGGCau -5'
6675 5' -62.6 NC_001847.1 + 132071 0.66 0.537934
Target:  5'- uGCGCGCCGGacgcgcuGGCgGCGCA-CCCGg- -3'
miRNA:   3'- -UGCGCGGCUc------UCGgCGUGUcGGGCau -5'
6675 5' -62.6 NC_001847.1 + 1943 0.66 0.52829
Target:  5'- cGCGCGgCGcAGAGCUccuccagcgaGgGCAGCCCGc- -3'
miRNA:   3'- -UGCGCgGC-UCUCGG----------CgUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 39486 0.66 0.52829
Target:  5'- cCGCGCCaGAGcGGcCCGCGCcGCCCc-- -3'
miRNA:   3'- uGCGCGG-CUC-UC-GGCGUGuCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 70304 0.66 0.537934
Target:  5'- gGCGCGCCGcgcuggucucGGAGCUGaagcGCCCGg- -3'
miRNA:   3'- -UGCGCGGC----------UCUCGGCguguCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 105873 0.66 0.537934
Target:  5'- cGCGCuCCGGGugcGCCGC-CAGCgCGUc -3'
miRNA:   3'- -UGCGcGGCUCu--CGGCGuGUCGgGCAu -5'
6675 5' -62.6 NC_001847.1 + 113007 0.66 0.537934
Target:  5'- uGCGCGCCGcc-GCCGCcGCcgGGCCCa-- -3'
miRNA:   3'- -UGCGCGGCucuCGGCG-UG--UCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 50105 0.66 0.52829
Target:  5'- cCGCGCCGGGcGgCGUAgAGCgCCGg- -3'
miRNA:   3'- uGCGCGGCUCuCgGCGUgUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 39459 0.66 0.52829
Target:  5'- cCGCGCCaGAGcGGcCCGCGCcGCCCc-- -3'
miRNA:   3'- uGCGCGG-CUC-UC-GGCGUGuCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 133520 0.66 0.537934
Target:  5'- uGCGCGCCGcggugcugccgcGGcgcagugcGCCGCGCgcuGGCCCGa- -3'
miRNA:   3'- -UGCGCGGC------------UCu-------CGGCGUG---UCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 93077 0.66 0.537934
Target:  5'- gAUGCGCCGc-AGCgGCAcCAGCCCc-- -3'
miRNA:   3'- -UGCGCGGCucUCGgCGU-GUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 30151 0.66 0.537934
Target:  5'- gGCGCGCCGuGcGCC-CugGGUgCGUGg -3'
miRNA:   3'- -UGCGCGGCuCuCGGcGugUCGgGCAU- -5'
6675 5' -62.6 NC_001847.1 + 39405 0.66 0.52829
Target:  5'- cCGCGCCaGAGcGGcCCGCGCcGCCCc-- -3'
miRNA:   3'- uGCGCGG-CUC-UC-GGCGUGuCGGGcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.