miRNA display CGI


Results 1 - 20 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 5' -62.6 NC_001847.1 + 134903 0.66 0.537934
Target:  5'- -gGCGCCGGGcgucgGGgCGCGaGGCCCGg- -3'
miRNA:   3'- ugCGCGGCUC-----UCgGCGUgUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 134780 0.68 0.462845
Target:  5'- gGCGCGCgGGGcgGGCCccgggGCGCgaAGCCCGg- -3'
miRNA:   3'- -UGCGCGgCUC--UCGG-----CGUG--UCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 134247 0.68 0.427407
Target:  5'- gGCG-GCCGGcGGCCGCGgCGGCCCc-- -3'
miRNA:   3'- -UGCgCGGCUcUCGGCGU-GUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 134214 0.67 0.490408
Target:  5'- cGCGgGCCGAGGGCgGCGgugggaaGGCCgGg- -3'
miRNA:   3'- -UGCgCGGCUCUCGgCGUg------UCGGgCau -5'
6675 5' -62.6 NC_001847.1 + 134125 0.69 0.410301
Target:  5'- gGCGCGCCGcGGGCgGC--GGCCUGg- -3'
miRNA:   3'- -UGCGCGGCuCUCGgCGugUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 134008 0.72 0.264376
Target:  5'- cGCGCGCCGAGGcGCCGC-C-GCUgGUGc -3'
miRNA:   3'- -UGCGCGGCUCU-CGGCGuGuCGGgCAU- -5'
6675 5' -62.6 NC_001847.1 + 133978 0.69 0.377398
Target:  5'- gGCGCcgggGCUGGGAGCgCGCGCGGCaUCGg- -3'
miRNA:   3'- -UGCG----CGGCUCUCG-GCGUGUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 133949 0.68 0.444928
Target:  5'- gGCGC-CCGAcGAGCUGC-CGGCCgCGg- -3'
miRNA:   3'- -UGCGcGGCU-CUCGGCGuGUCGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 133716 0.71 0.302542
Target:  5'- cACGCGCCu-GGGCCcgccaccGCGguGCCCGUGc -3'
miRNA:   3'- -UGCGCGGcuCUCGG-------CGUguCGGGCAU- -5'
6675 5' -62.6 NC_001847.1 + 133628 0.74 0.184878
Target:  5'- cGCGCGCCGAG-GCCGCcuacgcGCGGCUCu-- -3'
miRNA:   3'- -UGCGCGGCUCuCGGCG------UGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 133580 0.69 0.385456
Target:  5'- cGCGCGCCGuGcuGGCCuCGCGGCgCGUc -3'
miRNA:   3'- -UGCGCGGCuC--UCGGcGUGUCGgGCAu -5'
6675 5' -62.6 NC_001847.1 + 133520 0.66 0.537934
Target:  5'- uGCGCGCCGcggugcugccgcGGcgcagugcGCCGCGCgcuGGCCCGa- -3'
miRNA:   3'- -UGCGCGGC------------UCu-------CGGCGUG---UCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 133456 0.67 0.481133
Target:  5'- gACGCcguggaccCCGAGAacugGCCGCGCgacGGCCCGg- -3'
miRNA:   3'- -UGCGc-------GGCUCU----CGGCGUG---UCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 133324 0.67 0.471945
Target:  5'- gGCGCGCCGGacguGAGCgCGCuCGGCgCGc- -3'
miRNA:   3'- -UGCGCGGCU----CUCG-GCGuGUCGgGCau -5'
6675 5' -62.6 NC_001847.1 + 133032 0.7 0.346318
Target:  5'- gGCGCugGCCGAGAucgcggcccgccGCCGCGCgGGCCCc-- -3'
miRNA:   3'- -UGCG--CGGCUCU------------CGGCGUG-UCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 132951 0.66 0.577054
Target:  5'- cCGCcCCGAGGucGCgGCGCGGCUCGc- -3'
miRNA:   3'- uGCGcGGCUCU--CGgCGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 132835 0.69 0.385456
Target:  5'- cGCGUGCUGGGGcccauGCCGCccgGCGGCCCc-- -3'
miRNA:   3'- -UGCGCGGCUCU-----CGGCG---UGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 132807 0.79 0.091228
Target:  5'- gGCGCGgCGGGAGCCGcCGCuGCCCGc- -3'
miRNA:   3'- -UGCGCgGCUCUCGGC-GUGuCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 132589 0.67 0.487617
Target:  5'- cCGCGCCGaAGAcagcccGCCGgagagcagcgguccCGCGGCCCGg- -3'
miRNA:   3'- uGCGCGGC-UCU------CGGC--------------GUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 132546 0.66 0.547638
Target:  5'- gGCGCGgCGGGcucgcgugcGGCCGCGgCGGCCgCGc- -3'
miRNA:   3'- -UGCGCgGCUC---------UCGGCGU-GUCGG-GCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.