miRNA display CGI


Results 41 - 60 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 5' -62.6 NC_001847.1 + 18711 0.66 0.567203
Target:  5'- -aGCGCCcaccgcccucGAGCCcaagcGCGCGGCCCGg- -3'
miRNA:   3'- ugCGCGGcu--------CUCGG-----CGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 77579 0.66 0.567203
Target:  5'- cCGCGCgGGccGAGCuCGCACGGCggcacCCGUu -3'
miRNA:   3'- uGCGCGgCU--CUCG-GCGUGUCG-----GGCAu -5'
6675 5' -62.6 NC_001847.1 + 105936 0.66 0.567203
Target:  5'- cCGCgGCCGAGAGCaccgggaGCccgGCGGCgCCGg- -3'
miRNA:   3'- uGCG-CGGCUCUCGg------CG---UGUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 89906 0.66 0.567203
Target:  5'- gGCGC-CCGAGGuuguGCCGCGCgaGGCCgCGc- -3'
miRNA:   3'- -UGCGcGGCUCU----CGGCGUG--UCGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 50970 0.66 0.567203
Target:  5'- cACGaCGCCcAGucGGCgGCGCAGCUCGa- -3'
miRNA:   3'- -UGC-GCGGcUC--UCGgCGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 132143 0.66 0.567203
Target:  5'- gACGCGgUG-GAGCgCGCGCGGCuCCa-- -3'
miRNA:   3'- -UGCGCgGCuCUCG-GCGUGUCG-GGcau -5'
6675 5' -62.6 NC_001847.1 + 121448 0.66 0.567203
Target:  5'- cCGcCGCCGGGuuguuaaaugGGUcuCGCGCGGCUCGUGg -3'
miRNA:   3'- uGC-GCGGCUC----------UCG--GCGUGUCGGGCAU- -5'
6675 5' -62.6 NC_001847.1 + 11340 0.66 0.56622
Target:  5'- -gGCGCCG-GAGCgggagcacucguaCGCGCGGCCgCGc- -3'
miRNA:   3'- ugCGCGGCuCUCG-------------GCGUGUCGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 118933 0.66 0.56622
Target:  5'- cCGuCGCCcuucgcaGAcGGCCGCgaGCAGCCCGUc -3'
miRNA:   3'- uGC-GCGG-------CUcUCGGCG--UGUCGGGCAu -5'
6675 5' -62.6 NC_001847.1 + 62537 0.66 0.56622
Target:  5'- cACGUGCCGuGcGGCCaGCAgcgcguuuuggccCAGCCCGc- -3'
miRNA:   3'- -UGCGCGGCuC-UCGG-CGU-------------GUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 121866 0.66 0.564256
Target:  5'- cGCGCGCacaGGGccggcaccgcagucAGCaucaCGCGCAGCUCGUGc -3'
miRNA:   3'- -UGCGCGg--CUC--------------UCG----GCGUGUCGGGCAU- -5'
6675 5' -62.6 NC_001847.1 + 35961 0.66 0.557396
Target:  5'- cGCGCGaggaccaCGAGGGCgccaaggcgCGCGCAGCCgCGc- -3'
miRNA:   3'- -UGCGCg------GCUCUCG---------GCGUGUCGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 78374 0.66 0.557396
Target:  5'- aGCGUGCCGuucGAGCgCGC-CAGCUCc-- -3'
miRNA:   3'- -UGCGCGGCu--CUCG-GCGuGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 36560 0.66 0.557396
Target:  5'- gACGCGCUG-GcGCCGCGC-GCCUa-- -3'
miRNA:   3'- -UGCGCGGCuCuCGGCGUGuCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 21884 0.66 0.557396
Target:  5'- cGCGCuGCCGAG-GCCG---AGCCCGc- -3'
miRNA:   3'- -UGCG-CGGCUCuCGGCgugUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 29439 0.66 0.557396
Target:  5'- -aGCGCUGGGGcGUgGCGCcGCCCGc- -3'
miRNA:   3'- ugCGCGGCUCU-CGgCGUGuCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 33656 0.66 0.557396
Target:  5'- cGCGCGCgCGuG-GCCGC--GGCCCGc- -3'
miRNA:   3'- -UGCGCG-GCuCuCGGCGugUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 60997 0.66 0.557396
Target:  5'- gGCGcCGUCGAG-GCCGCcauCGGCgCCGc- -3'
miRNA:   3'- -UGC-GCGGCUCuCGGCGu--GUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 87430 0.66 0.557396
Target:  5'- cCGCGCuCGaAGAGCUGCugcgcgcgcucaACGGCCCc-- -3'
miRNA:   3'- uGCGCG-GC-UCUCGGCG------------UGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 42891 0.66 0.557396
Target:  5'- cCGCGCCaaGAgcgcGAGCUGCAgCGGCUCGa- -3'
miRNA:   3'- uGCGCGG--CU----CUCGGCGU-GUCGGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.