Results 61 - 80 of 554 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6675 | 5' | -62.6 | NC_001847.1 | + | 60997 | 0.66 | 0.557396 |
Target: 5'- gGCGcCGUCGAG-GCCGCcauCGGCgCCGc- -3' miRNA: 3'- -UGC-GCGGCUCuCGGCGu--GUCG-GGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 35961 | 0.66 | 0.557396 |
Target: 5'- cGCGCGaggaccaCGAGGGCgccaaggcgCGCGCAGCCgCGc- -3' miRNA: 3'- -UGCGCg------GCUCUCG---------GCGUGUCGG-GCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 87430 | 0.66 | 0.557396 |
Target: 5'- cCGCGCuCGaAGAGCUGCugcgcgcgcucaACGGCCCc-- -3' miRNA: 3'- uGCGCG-GC-UCUCGGCG------------UGUCGGGcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 33656 | 0.66 | 0.557396 |
Target: 5'- cGCGCGCgCGuG-GCCGC--GGCCCGc- -3' miRNA: 3'- -UGCGCG-GCuCuCGGCGugUCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 38945 | 0.66 | 0.556418 |
Target: 5'- cCGgGcCCGGGGGCCGCgagcgccauggcgGCGGCCgCGg- -3' miRNA: 3'- uGCgC-GGCUCUCGGCG-------------UGUCGG-GCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 132546 | 0.66 | 0.547638 |
Target: 5'- gGCGCGgCGGGcucgcgugcGGCCGCGgCGGCCgCGc- -3' miRNA: 3'- -UGCGCgGCUC---------UCGGCGU-GUCGG-GCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 44683 | 0.66 | 0.547638 |
Target: 5'- gGCGaGCCGcggauGGGCCGCGCGGaCCGc- -3' miRNA: 3'- -UGCgCGGCu----CUCGGCGUGUCgGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 57758 | 0.66 | 0.547638 |
Target: 5'- gGCGCGCUGgccacGGGGCUGCugGuGCUCGc- -3' miRNA: 3'- -UGCGCGGC-----UCUCGGCGugU-CGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 28204 | 0.66 | 0.547638 |
Target: 5'- uGCGCGCCac-GGCgGCGuuCGGCCCGg- -3' miRNA: 3'- -UGCGCGGcucUCGgCGU--GUCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 61453 | 0.66 | 0.547638 |
Target: 5'- cACGCGCCG--GGCCGCGCcuucaucgauGGCgCGg- -3' miRNA: 3'- -UGCGCGGCucUCGGCGUG----------UCGgGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 46755 | 0.66 | 0.547638 |
Target: 5'- gGCGCGCCcgcccGCCGCGCggGGCCgGUc -3' miRNA: 3'- -UGCGCGGcucu-CGGCGUG--UCGGgCAu -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 113622 | 0.66 | 0.547638 |
Target: 5'- gGCGCGuuGGc--CCGCGCGGCCCc-- -3' miRNA: 3'- -UGCGCggCUcucGGCGUGUCGGGcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 32810 | 0.66 | 0.547638 |
Target: 5'- gGCGCGuuG-GAGCCGgaCGCGGCCg--- -3' miRNA: 3'- -UGCGCggCuCUCGGC--GUGUCGGgcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 28480 | 0.66 | 0.547638 |
Target: 5'- gACGCGCCGcGGAcGCCGC--GGCgCCGc- -3' miRNA: 3'- -UGCGCGGC-UCU-CGGCGugUCG-GGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 84156 | 0.66 | 0.547638 |
Target: 5'- cGCGCGCCGGGGaCCuCGUAGCCCu-- -3' miRNA: 3'- -UGCGCGGCUCUcGGcGUGUCGGGcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 52556 | 0.66 | 0.547638 |
Target: 5'- gGCGcCGCCGcGAGCgcuucgCGCACGcGCuCCGUGu -3' miRNA: 3'- -UGC-GCGGCuCUCG------GCGUGU-CG-GGCAU- -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 114991 | 0.66 | 0.547638 |
Target: 5'- -aGCGCCGAGu-CCGCAuCGGgCCGa- -3' miRNA: 3'- ugCGCGGCUCucGGCGU-GUCgGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 94852 | 0.66 | 0.546665 |
Target: 5'- cUGCGCCGAGggggaccuuggggGGCgCGgGCAGCUCGc- -3' miRNA: 3'- uGCGCGGCUC-------------UCG-GCgUGUCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 102293 | 0.66 | 0.546665 |
Target: 5'- uCGCGCgCGAGcGCCGCggucucgGCGGCCaCGc- -3' miRNA: 3'- uGCGCG-GCUCuCGGCG-------UGUCGG-GCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 132011 | 0.66 | 0.544721 |
Target: 5'- gGCGcCGCCGGGcucccggugcucucGGCCGCggcgggccGCGGCCUGc- -3' miRNA: 3'- -UGC-GCGGCUC--------------UCGGCG--------UGUCGGGCau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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