miRNA display CGI


Results 41 - 60 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 5' -62.6 NC_001847.1 + 6897 0.67 0.471945
Target:  5'- gUGCGUCGGcGAGCgCGCGCGcGCCCu-- -3'
miRNA:   3'- uGCGCGGCU-CUCG-GCGUGU-CGGGcau -5'
6675 5' -62.6 NC_001847.1 + 7007 0.66 0.541808
Target:  5'- aACGCGaCGAGcGGCCGCGCAuccgccagcgccagcGCCaCGUc -3'
miRNA:   3'- -UGCGCgGCUC-UCGGCGUGU---------------CGG-GCAu -5'
6675 5' -62.6 NC_001847.1 + 7379 0.66 0.577054
Target:  5'- uGCGCcaccuGCCGGGcaAGCCGCcGCAGCUgcUGUAc -3'
miRNA:   3'- -UGCG-----CGGCUC--UCGGCG-UGUCGG--GCAU- -5'
6675 5' -62.6 NC_001847.1 + 7873 0.66 0.577054
Target:  5'- uCGgGCCGuuuGGGCCGC-CAGaCCCa-- -3'
miRNA:   3'- uGCgCGGCu--CUCGGCGuGUC-GGGcau -5'
6675 5' -62.6 NC_001847.1 + 8467 0.69 0.369454
Target:  5'- gGCGCcggGCCGGGGGCgGCGCucGGCCgGg- -3'
miRNA:   3'- -UGCG---CGGCUCUCGgCGUG--UCGGgCau -5'
6675 5' -62.6 NC_001847.1 + 9089 0.67 0.508254
Target:  5'- cGCGCGCgGGGuGCCGCucucggagccaccGCAgGCCCu-- -3'
miRNA:   3'- -UGCGCGgCUCuCGGCG-------------UGU-CGGGcau -5'
6675 5' -62.6 NC_001847.1 + 9558 0.67 0.518711
Target:  5'- -aGCGCUGc-AGCCGUcCAGCCCGc- -3'
miRNA:   3'- ugCGCGGCucUCGGCGuGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 9637 0.68 0.453839
Target:  5'- cCGCGCCGGcccGCCGCucgaGCAGCCgGg- -3'
miRNA:   3'- uGCGCGGCUcu-CGGCG----UGUCGGgCau -5'
6675 5' -62.6 NC_001847.1 + 10067 0.67 0.471945
Target:  5'- cGCGCGCUGc--GCCGCGC-GCUCGUc -3'
miRNA:   3'- -UGCGCGGCucuCGGCGUGuCGGGCAu -5'
6675 5' -62.6 NC_001847.1 + 10132 0.69 0.410301
Target:  5'- cGCGUGCUGGGAGgCGCugcuGCAGCUCu-- -3'
miRNA:   3'- -UGCGCGGCUCUCgGCG----UGUCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 10194 0.66 0.537934
Target:  5'- uGCGCGCCGcc-GCCGCcGCcgGGCCCa-- -3'
miRNA:   3'- -UGCGCGGCucuCGGCG-UG--UCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 10389 0.71 0.289806
Target:  5'- uCGCGgCG-GGGCCGCuuuaugACGGCCCGUc -3'
miRNA:   3'- uGCGCgGCuCUCGGCG------UGUCGGGCAu -5'
6675 5' -62.6 NC_001847.1 + 10593 0.69 0.410301
Target:  5'- cCGCGCgCGcGGGCCgGCGcCGGCCCGc- -3'
miRNA:   3'- uGCGCG-GCuCUCGG-CGU-GUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 10775 0.67 0.490408
Target:  5'- cGCGCGCgGgaAGAGCgGUACgcgGGCCUGUu -3'
miRNA:   3'- -UGCGCGgC--UCUCGgCGUG---UCGGGCAu -5'
6675 5' -62.6 NC_001847.1 + 11340 0.66 0.56622
Target:  5'- -gGCGCCG-GAGCgggagcacucguaCGCGCGGCCgCGc- -3'
miRNA:   3'- ugCGCGGCuCUCG-------------GCGUGUCGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 12065 0.69 0.369454
Target:  5'- uGCGgaCGCCGAG-GCCGCGgAGCgCCGc- -3'
miRNA:   3'- -UGC--GCGGCUCuCGGCGUgUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 12231 0.66 0.567203
Target:  5'- cGCGCGCacacccgaacggCGAGGGCUGCGauGCCCa-- -3'
miRNA:   3'- -UGCGCG------------GCUCUCGGCGUguCGGGcau -5'
6675 5' -62.6 NC_001847.1 + 12358 0.7 0.317116
Target:  5'- -aGCGCCccaccGGAGCCugcuggagcGCACGGCCCGg- -3'
miRNA:   3'- ugCGCGGc----UCUCGG---------CGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 12782 0.7 0.33148
Target:  5'- gACGCGCUGu--GCCGCACGccGCCCa-- -3'
miRNA:   3'- -UGCGCGGCucuCGGCGUGU--CGGGcau -5'
6675 5' -62.6 NC_001847.1 + 13123 0.68 0.444928
Target:  5'- gGCGCGCgGGcGGcGCCGCGCcGCCUGc- -3'
miRNA:   3'- -UGCGCGgCU-CU-CGGCGUGuCGGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.