miRNA display CGI


Results 41 - 60 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6676 3' -58.6 NC_001847.1 + 95753 0.73 0.399928
Target:  5'- cUCUGGCgcGGGGGGCGGCgcggGCCGCUcuGGCGc -3'
miRNA:   3'- -AGACUG--UCUCCUGCUG----CGGUGG--CCGC- -5'
6676 3' -58.6 NC_001847.1 + 95645 0.73 0.399928
Target:  5'- cUCUGGCgcGGGGGGCGGCgcggGCCGCUcuGGCGc -3'
miRNA:   3'- -AGACUG--UCUCCUGCUG----CGGUGG--CCGC- -5'
6676 3' -58.6 NC_001847.1 + 133182 0.73 0.399928
Target:  5'- gCUGGCGgcgccgcccggcGAGGACGAgCGCCGgCGGCc -3'
miRNA:   3'- aGACUGU------------CUCCUGCU-GCGGUgGCCGc -5'
6676 3' -58.6 NC_001847.1 + 116247 0.73 0.404973
Target:  5'- aUCUGGCGGuacgcggcgcugcGGACucuGGCGCCGCuCGGCGa -3'
miRNA:   3'- -AGACUGUCu------------CCUG---CUGCGGUG-GCCGC- -5'
6676 3' -58.6 NC_001847.1 + 50373 0.73 0.408359
Target:  5'- --cGACGcuaAGGACGGCGCCgccGCCGGCu -3'
miRNA:   3'- agaCUGUc--UCCUGCUGCGG---UGGCCGc -5'
6676 3' -58.6 NC_001847.1 + 27499 0.73 0.416899
Target:  5'- --cGGCAGAGGccuCGGcCGCCGCCgcGGCGg -3'
miRNA:   3'- agaCUGUCUCCu--GCU-GCGGUGG--CCGC- -5'
6676 3' -58.6 NC_001847.1 + 31423 0.73 0.416899
Target:  5'- gUCUGGCAGccgcGGCgGACGUCGCUGGCGc -3'
miRNA:   3'- -AGACUGUCuc--CUG-CUGCGGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 117569 0.73 0.425547
Target:  5'- aCUGcACGGGGGGCG-CGCUGcCCGGCc -3'
miRNA:   3'- aGAC-UGUCUCCUGCuGCGGU-GGCCGc -5'
6676 3' -58.6 NC_001847.1 + 123725 0.72 0.434301
Target:  5'- --cGGCAGcAGcGGCGGCGgCAUCGGCGg -3'
miRNA:   3'- agaCUGUC-UC-CUGCUGCgGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 106762 0.72 0.434301
Target:  5'- --cGGCGGGGGG-GGCGCCGucuCCGGCGc -3'
miRNA:   3'- agaCUGUCUCCUgCUGCGGU---GGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 134849 0.72 0.442269
Target:  5'- --gGGCGcGGGGACGGCGCCcgcgcggGCuCGGCGg -3'
miRNA:   3'- agaCUGU-CUCCUGCUGCGG-------UG-GCCGC- -5'
6676 3' -58.6 NC_001847.1 + 32036 0.72 0.442269
Target:  5'- --gGGCGcGGGGACGGCGCCcgcgcggGCuCGGCGg -3'
miRNA:   3'- agaCUGU-CUCCUGCUGCGG-------UG-GCCGC- -5'
6676 3' -58.6 NC_001847.1 + 82021 0.72 0.443159
Target:  5'- cCUGcCcGAGGAUGGCaagcaGCCGCUGGCGg -3'
miRNA:   3'- aGACuGuCUCCUGCUG-----CGGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 115869 0.72 0.443159
Target:  5'- --gGAcCGGAGGuCG-CGCCGCCGGCc -3'
miRNA:   3'- agaCU-GUCUCCuGCuGCGGUGGCCGc -5'
6676 3' -58.6 NC_001847.1 + 92353 0.72 0.443159
Target:  5'- --cGGCAcAGGGCGGCGCCGCgaGGCu -3'
miRNA:   3'- agaCUGUcUCCUGCUGCGGUGg-CCGc -5'
6676 3' -58.6 NC_001847.1 + 34452 0.72 0.443159
Target:  5'- --gGAC-GAGGccGCgGugGCCGCCGGCGg -3'
miRNA:   3'- agaCUGuCUCC--UG-CugCGGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 40383 0.72 0.443159
Target:  5'- ---aGCGGGGGGCGACgGCC-CCGGCc -3'
miRNA:   3'- agacUGUCUCCUGCUG-CGGuGGCCGc -5'
6676 3' -58.6 NC_001847.1 + 77612 0.72 0.443159
Target:  5'- uUCUGGCGgcgccgcugggcGAGGACGgcGCGCCGCCcGUGg -3'
miRNA:   3'- -AGACUGU------------CUCCUGC--UGCGGUGGcCGC- -5'
6676 3' -58.6 NC_001847.1 + 48405 0.72 0.443159
Target:  5'- --cGGCGGcaaagcGGGACG-CGUCGCCGGCGc -3'
miRNA:   3'- agaCUGUC------UCCUGCuGCGGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 111286 0.72 0.452118
Target:  5'- --gGGCcGGGGGCGGCGCUcgGCCGGgGg -3'
miRNA:   3'- agaCUGuCUCCUGCUGCGG--UGGCCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.