miRNA display CGI


Results 21 - 40 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6676 3' -58.6 NC_001847.1 + 59352 0.75 0.294153
Target:  5'- aUCgggGGCGGAGcGGCGGCGgCAgCGGCGg -3'
miRNA:   3'- -AGa--CUGUCUC-CUGCUGCgGUgGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 29629 0.75 0.300932
Target:  5'- --gGACAuGAGGGCcggGGCGCCGCgGGCGg -3'
miRNA:   3'- agaCUGU-CUCCUG---CUGCGGUGgCCGC- -5'
6676 3' -58.6 NC_001847.1 + 132442 0.75 0.300932
Target:  5'- --gGACAuGAGGGCcggGGCGCCGCgGGCGg -3'
miRNA:   3'- agaCUGU-CUCCUG---CUGCGGUGgCCGC- -5'
6676 3' -58.6 NC_001847.1 + 75815 0.75 0.32199
Target:  5'- -aUGcCGGGcuGGuACGGCGCCGCCGGCGc -3'
miRNA:   3'- agACuGUCU--CC-UGCUGCGGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 73221 0.75 0.32925
Target:  5'- gCUGACgcggaggaGGGGGGCGGCGgCGCgGGCGc -3'
miRNA:   3'- aGACUG--------UCUCCUGCUGCgGUGgCCGC- -5'
6676 3' -58.6 NC_001847.1 + 59896 0.75 0.329983
Target:  5'- gUUGGCgaGGAGGGCGGCGCgcgcgcgcggcgagaGCCGGCGg -3'
miRNA:   3'- aGACUG--UCUCCUGCUGCGg--------------UGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 33282 0.74 0.33663
Target:  5'- cCUGAUuggcGAGGACGACGCC-CCcGCGu -3'
miRNA:   3'- aGACUGu---CUCCUGCUGCGGuGGcCGC- -5'
6676 3' -58.6 NC_001847.1 + 53835 0.74 0.33663
Target:  5'- gCUGGCGGcGGcaGCGGCGgCGCUGGCGg -3'
miRNA:   3'- aGACUGUCuCC--UGCUGCgGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 69446 0.74 0.344129
Target:  5'- -gUGGCGGAcGGCGGCGCgCGCgCGGCGg -3'
miRNA:   3'- agACUGUCUcCUGCUGCG-GUG-GCCGC- -5'
6676 3' -58.6 NC_001847.1 + 112327 0.74 0.359487
Target:  5'- --cGGCGGGGaGCGGcCGCCGCCGGCc -3'
miRNA:   3'- agaCUGUCUCcUGCU-GCGGUGGCCGc -5'
6676 3' -58.6 NC_001847.1 + 3949 0.74 0.359487
Target:  5'- --cGGCGGGGGG-GGCGCCGucuCCGGCGg -3'
miRNA:   3'- agaCUGUCUCCUgCUGCGGU---GGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 81163 0.74 0.364186
Target:  5'- aCUGGCccgccgcgccgcucGGAGGgcucgcgGCGGCGCCAgCCGGCGc -3'
miRNA:   3'- aGACUG--------------UCUCC-------UGCUGCGGU-GGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 49699 0.74 0.366552
Target:  5'- cCUGcacuACGGGGGcGCGGCGCCcgugcaagugggcGCCGGCGa -3'
miRNA:   3'- aGAC----UGUCUCC-UGCUGCGG-------------UGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 31331 0.74 0.375316
Target:  5'- cCUGGUGGAGcGCGugcCGCCGCCGGCGg -3'
miRNA:   3'- aGACUGUCUCcUGCu--GCGGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 134144 0.74 0.375316
Target:  5'- cCUGGUGGAGcGCGugcCGCCGCCGGCGg -3'
miRNA:   3'- aGACUGUCUCcUGCu--GCGGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 30044 0.73 0.383406
Target:  5'- --cGGCcGuGGGCGACGUUGCCGGCGc -3'
miRNA:   3'- agaCUGuCuCCUGCUGCGGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 71003 0.73 0.39161
Target:  5'- gCUGACGGAGGuuucguuCGGCGCgGCCaugGGCa -3'
miRNA:   3'- aGACUGUCUCCu------GCUGCGgUGG---CCGc -5'
6676 3' -58.6 NC_001847.1 + 99786 0.73 0.399928
Target:  5'- --gGGCGGGGGGCaGCGCCugUGGUGc -3'
miRNA:   3'- agaCUGUCUCCUGcUGCGGugGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 95753 0.73 0.399928
Target:  5'- cUCUGGCgcGGGGGGCGGCgcggGCCGCUcuGGCGc -3'
miRNA:   3'- -AGACUG--UCUCCUGCUG----CGGUGG--CCGC- -5'
6676 3' -58.6 NC_001847.1 + 95699 0.73 0.399928
Target:  5'- cUCUGGCgcGGGGGGCGGCgcggGCCGCUcuGGCGc -3'
miRNA:   3'- -AGACUG--UCUCCUGCUG----CGGUGG--CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.