Results 21 - 40 of 317 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6676 | 3' | -58.6 | NC_001847.1 | + | 119586 | 0.66 | 0.791084 |
Target: 5'- --cGAUGGGGGuuccccCG-CGCCACCcGGCGa -3' miRNA: 3'- agaCUGUCUCCu-----GCuGCGGUGG-CCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 38108 | 0.66 | 0.791084 |
Target: 5'- cCUGACGcuagacuacGAGGACG-CGCUGCCccccGCGg -3' miRNA: 3'- aGACUGU---------CUCCUGCuGCGGUGGc---CGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 18638 | 0.66 | 0.772941 |
Target: 5'- --aGGCAGAGGugcucggcgagcGCGACGCCgugcccGCCcGCGa -3' miRNA: 3'- agaCUGUCUCC------------UGCUGCGG------UGGcCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 62474 | 0.66 | 0.808675 |
Target: 5'- ---aGCAG-GGcCGGgGUCGCCGGCGg -3' miRNA: 3'- agacUGUCuCCuGCUgCGGUGGCCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 80844 | 0.66 | 0.807809 |
Target: 5'- --gGGCAGAuccGGGCGGCggcgcgcgucgagGCCGuCCGGCa -3' miRNA: 3'- agaCUGUCU---CCUGCUG-------------CGGU-GGCCGc -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 59544 | 0.66 | 0.808675 |
Target: 5'- -aUGGCAGgcggugGGGGCGGCGggggcgguGCCGGCGg -3' miRNA: 3'- agACUGUC------UCCUGCUGCgg------UGGCCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 73539 | 0.66 | 0.817243 |
Target: 5'- gCUGauuGCGGAGGugGGCGCgGgCGugucGCGg -3' miRNA: 3'- aGAC---UGUCUCCugCUGCGgUgGC----CGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 17810 | 0.66 | 0.808675 |
Target: 5'- ---cGCGGGGGGCGAgGCCGCCccccGCc -3' miRNA: 3'- agacUGUCUCCUGCUgCGGUGGc---CGc -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 67966 | 0.66 | 0.799953 |
Target: 5'- --cGGCAGGGGGu--CGCCGCCGagaGCGg -3' miRNA: 3'- agaCUGUCUCCUgcuGCGGUGGC---CGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 104293 | 0.66 | 0.807809 |
Target: 5'- --cGGCAGAGccgcagcGGCGGCGCCucgggguagaGCCGcGCGu -3' miRNA: 3'- agaCUGUCUC-------CUGCUGCGG----------UGGC-CGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 78393 | 0.66 | 0.791084 |
Target: 5'- -aUGGCcGAGGACccCGCCGCUgcgGGCGc -3' miRNA: 3'- agACUGuCUCCUGcuGCGGUGG---CCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 35636 | 0.66 | 0.772941 |
Target: 5'- gCUGGggcCAGcgcuGGACcGCGCCGCCucGGCGg -3' miRNA: 3'- aGACU---GUCu---CCUGcUGCGGUGG--CCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 131315 | 0.66 | 0.782077 |
Target: 5'- uUCUGGC-GAGG-CGugGCC--CGGCa -3' miRNA: 3'- -AGACUGuCUCCuGCugCGGugGCCGc -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 11495 | 0.66 | 0.799072 |
Target: 5'- aUCUGGCucAGgcgccuucagccaAGGGCGcCGCC-CCGGCc -3' miRNA: 3'- -AGACUG--UC-------------UCCUGCuGCGGuGGCCGc -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 15065 | 0.66 | 0.799953 |
Target: 5'- aUCUGACcggcggcccGGGGAU--CGCCugCGGCa -3' miRNA: 3'- -AGACUGu--------CUCCUGcuGCGGugGCCGc -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 10845 | 0.66 | 0.808675 |
Target: 5'- --cGACGGcGGcGCGugGCCgagGCgCGGCGg -3' miRNA: 3'- agaCUGUCuCC-UGCugCGG---UG-GCCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 84581 | 0.66 | 0.817243 |
Target: 5'- gUCgu-CAGAGG-CGACGCCG-CGGUc -3' miRNA: 3'- -AGacuGUCUCCuGCUGCGGUgGCCGc -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 87685 | 0.66 | 0.782077 |
Target: 5'- --gGGCGcuGGGGcugcuGCGGCGCCGCggCGGCGg -3' miRNA: 3'- agaCUGU--CUCC-----UGCUGCGGUG--GCCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 53246 | 0.66 | 0.782077 |
Target: 5'- gCUGGCu----GCGGCGCCGCCucGGCGg -3' miRNA: 3'- aGACUGucuccUGCUGCGGUGG--CCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 28565 | 0.66 | 0.782077 |
Target: 5'- --cGAC-GAGGAcaCGGCGCCgggGCUGGCu -3' miRNA: 3'- agaCUGuCUCCU--GCUGCGG---UGGCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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