miRNA display CGI


Results 21 - 40 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6676 3' -58.6 NC_001847.1 + 8473 0.72 0.452118
Target:  5'- --gGGCcGGGGGCGGCGCUcgGCCGGgGg -3'
miRNA:   3'- agaCUGuCUCCUGCUGCGG--UGGCCgC- -5'
6676 3' -58.6 NC_001847.1 + 8601 0.67 0.754312
Target:  5'- --cGcCAG-GGGCGGCGCUcgGCCGGgGg -3'
miRNA:   3'- agaCuGUCuCCUGCUGCGG--UGGCCgC- -5'
6676 3' -58.6 NC_001847.1 + 10845 0.66 0.808675
Target:  5'- --cGACGGcGGcGCGugGCCgagGCgCGGCGg -3'
miRNA:   3'- agaCUGUCuCC-UGCugCGG---UG-GCCGC- -5'
6676 3' -58.6 NC_001847.1 + 11144 0.66 0.799953
Target:  5'- --cGGCGGAGcuGCGGCGgcuaaaCUACCGGCGu -3'
miRNA:   3'- agaCUGUCUCc-UGCUGC------GGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 11495 0.66 0.799072
Target:  5'- aUCUGGCucAGgcgccuucagccaAGGGCGcCGCC-CCGGCc -3'
miRNA:   3'- -AGACUG--UC-------------UCCUGCuGCGGuGGCCGc -5'
6676 3' -58.6 NC_001847.1 + 13122 0.7 0.590085
Target:  5'- --gGGCGcGcGGGCGGCGCCgcgccgccugccgcgGCCGGCGg -3'
miRNA:   3'- agaCUGU-CuCCUGCUGCGG---------------UGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 14198 0.66 0.799953
Target:  5'- gCUGGCGGcGGGGCuGGCGgUcagGCCGGCc -3'
miRNA:   3'- aGACUGUC-UCCUG-CUGCgG---UGGCCGc -5'
6676 3' -58.6 NC_001847.1 + 14342 0.67 0.735268
Target:  5'- --gGGCGuGGuGGCGGCGCCugCGGgGa -3'
miRNA:   3'- agaCUGUcUC-CUGCUGCGGugGCCgC- -5'
6676 3' -58.6 NC_001847.1 + 14660 0.76 0.280954
Target:  5'- gCUGACGuGAacaucGACGGCGCgGCCGGCGg -3'
miRNA:   3'- aGACUGU-CUc----CUGCUGCGgUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 15065 0.66 0.799953
Target:  5'- aUCUGACcggcggcccGGGGAU--CGCCugCGGCa -3'
miRNA:   3'- -AGACUGu--------CUCCUGcuGCGGugGCCGc -5'
6676 3' -58.6 NC_001847.1 + 16579 0.7 0.585094
Target:  5'- --gGACAGcggggucGGGGCGGCGUggggUGCCGGCGa -3'
miRNA:   3'- agaCUGUC-------UCCUGCUGCG----GUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 16757 0.7 0.56621
Target:  5'- gCUGAC-GAGGACGGgGCUuccgauuagGCCgGGCGa -3'
miRNA:   3'- aGACUGuCUCCUGCUgCGG---------UGG-CCGC- -5'
6676 3' -58.6 NC_001847.1 + 17810 0.66 0.808675
Target:  5'- ---cGCGGGGGGCGAgGCCGCCccccGCc -3'
miRNA:   3'- agacUGUCUCCUGCUgCGGUGGc---CGc -5'
6676 3' -58.6 NC_001847.1 + 17935 0.67 0.725612
Target:  5'- cUCgGACAc-GGACGGCGgCuCCGGCGu -3'
miRNA:   3'- -AGaCUGUcuCCUGCUGCgGuGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 18638 0.66 0.772941
Target:  5'- --aGGCAGAGGugcucggcgagcGCGACGCCgugcccGCCcGCGa -3'
miRNA:   3'- agaCUGUCUCC------------UGCUGCGG------UGGcCGC- -5'
6676 3' -58.6 NC_001847.1 + 20385 0.68 0.656326
Target:  5'- gUUGAgCAGAGaGGCGaccgcgaccGCGaCCGCCGGCa -3'
miRNA:   3'- aGACU-GUCUC-CUGC---------UGC-GGUGGCCGc -5'
6676 3' -58.6 NC_001847.1 + 20668 0.66 0.772941
Target:  5'- --gGGCGGA-GACGucCGCCAgCUGGCGg -3'
miRNA:   3'- agaCUGUCUcCUGCu-GCGGU-GGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 20700 0.71 0.527027
Target:  5'- --aGACGagugcuacGAGGACGAgGCCccGCUGGCGg -3'
miRNA:   3'- agaCUGU--------CUCCUGCUgCGG--UGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 21199 0.66 0.808675
Target:  5'- --cGGCGGcguAGGA-GACGCCGCC-GCGa -3'
miRNA:   3'- agaCUGUC---UCCUgCUGCGGUGGcCGC- -5'
6676 3' -58.6 NC_001847.1 + 21657 0.7 0.536736
Target:  5'- --cGAcCGGAGGGCGA-GCCccCCGGCGa -3'
miRNA:   3'- agaCU-GUCUCCUGCUgCGGu-GGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.