miRNA display CGI


Results 1 - 20 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6676 3' -58.6 NC_001847.1 + 426 0.71 0.498317
Target:  5'- --gGGCGGGcGGGCGGCGgCGgCGGCGg -3'
miRNA:   3'- agaCUGUCU-CCUGCUGCgGUgGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 449 0.67 0.715878
Target:  5'- --nGGCAGcAGcGGCGGCGgCGgCGGCGg -3'
miRNA:   3'- agaCUGUC-UC-CUGCUGCgGUgGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 556 0.7 0.546507
Target:  5'- -gUGGCGGcGGACGccaGCGCCGcgucuCCGGCGc -3'
miRNA:   3'- agACUGUCuCCUGC---UGCGGU-----GGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 760 0.72 0.461175
Target:  5'- --gGGC-GAGGcCGGCccGCCGCCGGCGg -3'
miRNA:   3'- agaCUGuCUCCuGCUG--CGGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 810 0.78 0.211496
Target:  5'- --aGGCGGGGGACGACGCCG-CGGaCGa -3'
miRNA:   3'- agaCUGUCUCCUGCUGCGGUgGCC-GC- -5'
6676 3' -58.6 NC_001847.1 + 1103 0.69 0.616138
Target:  5'- --cGGCcGcGGGCGGCGCCGCC-GCGg -3'
miRNA:   3'- agaCUGuCuCCUGCUGCGGUGGcCGC- -5'
6676 3' -58.6 NC_001847.1 + 1480 0.66 0.807809
Target:  5'- --cGGCAGAGccgcagcGGCGGCGCCucgggguagaGCCGcGCGu -3'
miRNA:   3'- agaCUGUCUC-------CUGCUGCGG----------UGGC-CGC- -5'
6676 3' -58.6 NC_001847.1 + 1919 0.69 0.646288
Target:  5'- --gGGCAGGuGGCGAgGCUuaGCCGGCGc -3'
miRNA:   3'- agaCUGUCUcCUGCUgCGG--UGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 2761 0.66 0.817243
Target:  5'- --cGGCGGcgccGGcgcCGGCGCCcccGCCGGCGg -3'
miRNA:   3'- agaCUGUCu---CCu--GCUGCGG---UGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 3259 0.76 0.280954
Target:  5'- --cGGCAGGGGcgcCGGCGCCgcgcgGCCGGCGa -3'
miRNA:   3'- agaCUGUCUCCu--GCUGCGG-----UGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 3336 0.68 0.696212
Target:  5'- ---cGCAGGGGugcguuaugcCGACGCUGCCGGCc -3'
miRNA:   3'- agacUGUCUCCu---------GCUGCGGUGGCCGc -5'
6676 3' -58.6 NC_001847.1 + 3949 0.74 0.359487
Target:  5'- --cGGCGGGGGG-GGCGCCGucuCCGGCGg -3'
miRNA:   3'- agaCUGUCUCCUgCUGCGGU---GGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 4625 0.68 0.696212
Target:  5'- --cGGCGc-GGGCGGC-CCGCCGGCGc -3'
miRNA:   3'- agaCUGUcuCCUGCUGcGGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 4809 0.67 0.74864
Target:  5'- gCUGGacGAGGcgcGCGAUgcccuugagcgugggGCCGCCGGCGa -3'
miRNA:   3'- aGACUguCUCC---UGCUG---------------CGGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 5290 0.66 0.772941
Target:  5'- --gGACGGGGGuACGGCGagCGCgaCGGCGa -3'
miRNA:   3'- agaCUGUCUCC-UGCUGCg-GUG--GCCGC- -5'
6676 3' -58.6 NC_001847.1 + 5737 0.71 0.488901
Target:  5'- gUCgcauCAGGGGACGcacCGCCGuCCGGCGc -3'
miRNA:   3'- -AGacu-GUCUCCUGCu--GCGGU-GGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 6490 0.72 0.461175
Target:  5'- cCUG-CAGgucguAGGuaGCGGCGUCGCCGGCGc -3'
miRNA:   3'- aGACuGUC-----UCC--UGCUGCGGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 6851 0.66 0.791084
Target:  5'- --gGGgGGGGGGCGGCGCUugCuuuGGCc -3'
miRNA:   3'- agaCUgUCUCCUGCUGCGGugG---CCGc -5'
6676 3' -58.6 NC_001847.1 + 7384 0.78 0.201468
Target:  5'- gCUGACaguGGAGGACGugGCgCGCuCGGCa -3'
miRNA:   3'- aGACUG---UCUCCUGCugCG-GUG-GCCGc -5'
6676 3' -58.6 NC_001847.1 + 8073 0.66 0.799953
Target:  5'- ---cGCAGAGGGgGGCaCCGCCgcGGCGa -3'
miRNA:   3'- agacUGUCUCCUgCUGcGGUGG--CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.