miRNA display CGI


Results 1 - 20 of 317 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6676 3' -58.6 NC_001847.1 + 134849 0.72 0.442269
Target:  5'- --gGGCGcGGGGACGGCGCCcgcgcggGCuCGGCGg -3'
miRNA:   3'- agaCUGU-CUCCUGCUGCGG-------UG-GCCGC- -5'
6676 3' -58.6 NC_001847.1 + 134366 0.82 0.110208
Target:  5'- --cGACGacGAGGcCGGCGCCGCCGGCGg -3'
miRNA:   3'- agaCUGU--CUCCuGCUGCGGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 134144 0.74 0.375316
Target:  5'- cCUGGUGGAGcGCGugcCGCCGCCGGCGg -3'
miRNA:   3'- aGACUGUCUCcUGCu--GCGGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 134027 0.7 0.576132
Target:  5'- gCUGGugcUGGAGGccgcgGCGGCGCCGCCcGCGg -3'
miRNA:   3'- aGACU---GUCUCC-----UGCUGCGGUGGcCGC- -5'
6676 3' -58.6 NC_001847.1 + 133182 0.73 0.399928
Target:  5'- gCUGGCGgcgccgcccggcGAGGACGAgCGCCGgCGGCc -3'
miRNA:   3'- aGACUGU------------CUCCUGCU-GCGGUgGCCGc -5'
6676 3' -58.6 NC_001847.1 + 133035 0.67 0.744838
Target:  5'- gCUGGCcGAGaucGCGGCccGCCGCCGcGCGg -3'
miRNA:   3'- aGACUGuCUCc--UGCUG--CGGUGGC-CGC- -5'
6676 3' -58.6 NC_001847.1 + 132743 0.72 0.452118
Target:  5'- --cGGgGGAGGACGACucuggGCCgaggcGCCGGCGa -3'
miRNA:   3'- agaCUgUCUCCUGCUG-----CGG-----UGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 132694 0.66 0.808675
Target:  5'- --gGACGG-GGACGGCGaggcggcggccCUGCCGGCc -3'
miRNA:   3'- agaCUGUCuCCUGCUGC-----------GGUGGCCGc -5'
6676 3' -58.6 NC_001847.1 + 132675 0.67 0.754312
Target:  5'- --cGGCGG-GGGCGcCGCCGCCcGCu -3'
miRNA:   3'- agaCUGUCuCCUGCuGCGGUGGcCGc -5'
6676 3' -58.6 NC_001847.1 + 132456 0.71 0.488901
Target:  5'- gCUGgagggcGCGGAGGACGA-GCCgauGCCGGCc -3'
miRNA:   3'- aGAC------UGUCUCCUGCUgCGG---UGGCCGc -5'
6676 3' -58.6 NC_001847.1 + 132442 0.75 0.300932
Target:  5'- --gGACAuGAGGGCcggGGCGCCGCgGGCGg -3'
miRNA:   3'- agaCUGU-CUCCUG---CUGCGGUGgCCGC- -5'
6676 3' -58.6 NC_001847.1 + 132379 0.71 0.507812
Target:  5'- --cGGCGG-GGGCGcCGgCGCCGGCGc -3'
miRNA:   3'- agaCUGUCuCCUGCuGCgGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 132327 0.77 0.24418
Target:  5'- --cGGCGGAGGugcCGGCGCgGCUGGCGg -3'
miRNA:   3'- agaCUGUCUCCu--GCUGCGgUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 131982 0.69 0.625181
Target:  5'- --aGGCgcuGGAGG-CGgcccgccGCGCCGCCGGCGc -3'
miRNA:   3'- agaCUG---UCUCCuGC-------UGCGGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 131807 0.71 0.527027
Target:  5'- -aUGGCcuacccGGAGGcCGGCGCCGgCGGCa -3'
miRNA:   3'- agACUG------UCUCCuGCUGCGGUgGCCGc -5'
6676 3' -58.6 NC_001847.1 + 131755 0.68 0.666346
Target:  5'- gCUGcuuGCGGAGGGCuuuGCGCgGCuCGGCGc -3'
miRNA:   3'- aGAC---UGUCUCCUGc--UGCGgUG-GCCGC- -5'
6676 3' -58.6 NC_001847.1 + 131315 0.66 0.782077
Target:  5'- uUCUGGC-GAGG-CGugGCC--CGGCa -3'
miRNA:   3'- -AGACUGuCUCCuGCugCGGugGCCGc -5'
6676 3' -58.6 NC_001847.1 + 130903 0.71 0.507812
Target:  5'- --aGGCGGGGGGCGGCggugcccucgggGCCaggaccgagGCCGGCGa -3'
miRNA:   3'- agaCUGUCUCCUGCUG------------CGG---------UGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 130864 0.67 0.734306
Target:  5'- --aGGCGG-GGGCGGCGCCccucaagGCCGaaGCGg -3'
miRNA:   3'- agaCUGUCuCCUGCUGCGG-------UGGC--CGC- -5'
6676 3' -58.6 NC_001847.1 + 130823 0.68 0.665345
Target:  5'- -aUGGCGGAGcacuacccgcaGGCGGCGCgcgaguaccaaggCGCCGGCGc -3'
miRNA:   3'- agACUGUCUC-----------CUGCUGCG-------------GUGGCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.