Results 1 - 20 of 317 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6676 | 3' | -58.6 | NC_001847.1 | + | 131315 | 0.66 | 0.782077 |
Target: 5'- uUCUGGC-GAGG-CGugGCC--CGGCa -3' miRNA: 3'- -AGACUGuCUCCuGCugCGGugGCCGc -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 109664 | 0.66 | 0.791084 |
Target: 5'- --gGGgGGGGGGCGGCGCUugCuuuGGCc -3' miRNA: 3'- agaCUgUCUCCUGCUGCGGugG---CCGc -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 71075 | 0.66 | 0.782077 |
Target: 5'- gCUGGCGGcgcucGGcCGGCGCgGCCagaGGCGa -3' miRNA: 3'- aGACUGUCu----CCuGCUGCGgUGG---CCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 78393 | 0.66 | 0.791084 |
Target: 5'- -aUGGCcGAGGACccCGCCGCUgcgGGCGc -3' miRNA: 3'- agACUGuCUCCUGcuGCGGUGG---CCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 124522 | 0.66 | 0.791084 |
Target: 5'- --aGcCGGAGGACcaGCGCCagcagggcgcggGCCGGCGc -3' miRNA: 3'- agaCuGUCUCCUGc-UGCGG------------UGGCCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 38108 | 0.66 | 0.791084 |
Target: 5'- cCUGACGcuagacuacGAGGACG-CGCUGCCccccGCGg -3' miRNA: 3'- aGACUGU---------CUCCUGCuGCGGUGGc---CGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 91053 | 0.66 | 0.799953 |
Target: 5'- --aGGCGGcGGGCgcaGACGCCGCagcaGGCa -3' miRNA: 3'- agaCUGUCuCCUG---CUGCGGUGg---CCGc -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 130502 | 0.66 | 0.791084 |
Target: 5'- gUCgGGCuGAGG-CG-CGCgagCGCCGGCGg -3' miRNA: 3'- -AGaCUGuCUCCuGCuGCG---GUGGCCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 8073 | 0.66 | 0.799953 |
Target: 5'- ---cGCAGAGGGgGGCaCCGCCgcGGCGa -3' miRNA: 3'- agacUGUCUCCUgCUGcGGUGG--CCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 20668 | 0.66 | 0.772941 |
Target: 5'- --gGGCGGA-GACGucCGCCAgCUGGCGg -3' miRNA: 3'- agaCUGUCUcCUGCu-GCGGU-GGCCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 108103 | 0.66 | 0.772941 |
Target: 5'- --gGACGGGGGuACGGCGagCGCgaCGGCGa -3' miRNA: 3'- agaCUGUCUCC-UGCUGCg-GUG--GCCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 53246 | 0.66 | 0.782077 |
Target: 5'- gCUGGCu----GCGGCGCCGCCucGGCGg -3' miRNA: 3'- aGACUGucuccUGCUGCGGUGG--CCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 18638 | 0.66 | 0.772941 |
Target: 5'- --aGGCAGAGGugcucggcgagcGCGACGCCgugcccGCCcGCGa -3' miRNA: 3'- agaCUGUCUCC------------UGCUGCGG------UGGcCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 11495 | 0.66 | 0.799072 |
Target: 5'- aUCUGGCucAGgcgccuucagccaAGGGCGcCGCC-CCGGCc -3' miRNA: 3'- -AGACUG--UC-------------UCCUGCuGCGGuGGCCGc -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 35920 | 0.66 | 0.799072 |
Target: 5'- --cGugGGAGccuuuguGGCGgcGCGCCGCCGcGCGg -3' miRNA: 3'- agaCugUCUC-------CUGC--UGCGGUGGC-CGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 28565 | 0.66 | 0.782077 |
Target: 5'- --cGAC-GAGGAcaCGGCGCCgggGCUGGCu -3' miRNA: 3'- agaCUGuCUCCU--GCUGCGG---UGGCCGc -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 87685 | 0.66 | 0.782077 |
Target: 5'- --gGGCGcuGGGGcugcuGCGGCGCCGCggCGGCGg -3' miRNA: 3'- agaCUGU--CUCC-----UGCUGCGGUG--GCCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 35636 | 0.66 | 0.772941 |
Target: 5'- gCUGGggcCAGcgcuGGACcGCGCCGCCucGGCGg -3' miRNA: 3'- aGACU---GUCu---CCUGcUGCGGUGG--CCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 119586 | 0.66 | 0.791084 |
Target: 5'- --cGAUGGGGGuuccccCG-CGCCACCcGGCGa -3' miRNA: 3'- agaCUGUCUCCu-----GCuGCGGUGG-CCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 34697 | 0.66 | 0.791977 |
Target: 5'- gCUGGCGcGAGGACuugcGCGCCGCgcuggagcgcgucgaGGCGa -3' miRNA: 3'- aGACUGU-CUCCUGc---UGCGGUGg--------------CCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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