miRNA display CGI


Results 1 - 20 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6676 3' -58.6 NC_001847.1 + 35636 0.66 0.772941
Target:  5'- gCUGGggcCAGcgcuGGACcGCGCCGCCucGGCGg -3'
miRNA:   3'- aGACU---GUCu---CCUGcUGCGGUGG--CCGC- -5'
6676 3' -58.6 NC_001847.1 + 119586 0.66 0.791084
Target:  5'- --cGAUGGGGGuuccccCG-CGCCACCcGGCGa -3'
miRNA:   3'- agaCUGUCUCCu-----GCuGCGGUGG-CCGC- -5'
6676 3' -58.6 NC_001847.1 + 130502 0.66 0.791084
Target:  5'- gUCgGGCuGAGG-CG-CGCgagCGCCGGCGg -3'
miRNA:   3'- -AGaCUGuCUCCuGCuGCG---GUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 34697 0.66 0.791977
Target:  5'- gCUGGCGcGAGGACuugcGCGCCGCgcuggagcgcgucgaGGCGa -3'
miRNA:   3'- aGACUGU-CUCCUGc---UGCGGUGg--------------CCGC- -5'
6676 3' -58.6 NC_001847.1 + 20668 0.66 0.772941
Target:  5'- --gGGCGGA-GACGucCGCCAgCUGGCGg -3'
miRNA:   3'- agaCUGUCUcCUGCu-GCGGU-GGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 35920 0.66 0.799072
Target:  5'- --cGugGGAGccuuuguGGCGgcGCGCCGCCGcGCGg -3'
miRNA:   3'- agaCugUCUC-------CUGC--UGCGGUGGC-CGC- -5'
6676 3' -58.6 NC_001847.1 + 38108 0.66 0.791084
Target:  5'- cCUGACGcuagacuacGAGGACG-CGCUGCCccccGCGg -3'
miRNA:   3'- aGACUGU---------CUCCUGCuGCGGUGGc---CGC- -5'
6676 3' -58.6 NC_001847.1 + 87685 0.66 0.782077
Target:  5'- --gGGCGcuGGGGcugcuGCGGCGCCGCggCGGCGg -3'
miRNA:   3'- agaCUGU--CUCC-----UGCUGCGGUG--GCCGC- -5'
6676 3' -58.6 NC_001847.1 + 11495 0.66 0.799072
Target:  5'- aUCUGGCucAGgcgccuucagccaAGGGCGcCGCC-CCGGCc -3'
miRNA:   3'- -AGACUG--UC-------------UCCUGCuGCGGuGGCCGc -5'
6676 3' -58.6 NC_001847.1 + 53246 0.66 0.782077
Target:  5'- gCUGGCu----GCGGCGCCGCCucGGCGg -3'
miRNA:   3'- aGACUGucuccUGCUGCGGUGG--CCGC- -5'
6676 3' -58.6 NC_001847.1 + 124522 0.66 0.791084
Target:  5'- --aGcCGGAGGACcaGCGCCagcagggcgcggGCCGGCGc -3'
miRNA:   3'- agaCuGUCUCCUGc-UGCGG------------UGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 28565 0.66 0.782077
Target:  5'- --cGAC-GAGGAcaCGGCGCCgggGCUGGCu -3'
miRNA:   3'- agaCUGuCUCCU--GCUGCGG---UGGCCGc -5'
6676 3' -58.6 NC_001847.1 + 8073 0.66 0.799953
Target:  5'- ---cGCAGAGGGgGGCaCCGCCgcGGCGa -3'
miRNA:   3'- agacUGUCUCCUgCUGcGGUGG--CCGC- -5'
6676 3' -58.6 NC_001847.1 + 109664 0.66 0.791084
Target:  5'- --gGGgGGGGGGCGGCGCUugCuuuGGCc -3'
miRNA:   3'- agaCUgUCUCCUGCUGCGGugG---CCGc -5'
6676 3' -58.6 NC_001847.1 + 131315 0.66 0.782077
Target:  5'- uUCUGGC-GAGG-CGugGCC--CGGCa -3'
miRNA:   3'- -AGACUGuCUCCuGCugCGGugGCCGc -5'
6676 3' -58.6 NC_001847.1 + 108103 0.66 0.772941
Target:  5'- --gGACGGGGGuACGGCGagCGCgaCGGCGa -3'
miRNA:   3'- agaCUGUCUCC-UGCUGCg-GUG--GCCGC- -5'
6676 3' -58.6 NC_001847.1 + 71075 0.66 0.782077
Target:  5'- gCUGGCGGcgcucGGcCGGCGCgGCCagaGGCGa -3'
miRNA:   3'- aGACUGUCu----CCuGCUGCGgUGG---CCGC- -5'
6676 3' -58.6 NC_001847.1 + 91053 0.66 0.799953
Target:  5'- --aGGCGGcGGGCgcaGACGCCGCagcaGGCa -3'
miRNA:   3'- agaCUGUCuCCUG---CUGCGGUGg---CCGc -5'
6676 3' -58.6 NC_001847.1 + 18638 0.66 0.772941
Target:  5'- --aGGCAGAGGugcucggcgagcGCGACGCCgugcccGCCcGCGa -3'
miRNA:   3'- agaCUGUCUCC------------UGCUGCGG------UGGcCGC- -5'
6676 3' -58.6 NC_001847.1 + 78393 0.66 0.791084
Target:  5'- -aUGGCcGAGGACccCGCCGCUgcgGGCGc -3'
miRNA:   3'- agACUGuCUCCUGcuGCGGUGG---CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.