Results 1 - 20 of 317 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6676 | 3' | -58.6 | NC_001847.1 | + | 95370 | 0.83 | 0.101992 |
Target: 5'- gCUGGCGGcGGACcGCGCCGCCGGCu -3' miRNA: 3'- aGACUGUCuCCUGcUGCGGUGGCCGc -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 69446 | 0.74 | 0.344129 |
Target: 5'- -gUGGCGGAcGGCGGCGCgCGCgCGGCGg -3' miRNA: 3'- agACUGUCUcCUGCUGCG-GUG-GCCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 53835 | 0.74 | 0.33663 |
Target: 5'- gCUGGCGGcGGcaGCGGCGgCGCUGGCGg -3' miRNA: 3'- aGACUGUCuCC--UGCUGCgGUGGCCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 59896 | 0.75 | 0.329983 |
Target: 5'- gUUGGCgaGGAGGGCGGCGCgcgcgcgcggcgagaGCCGGCGg -3' miRNA: 3'- aGACUG--UCUCCUGCUGCGg--------------UGGCCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 132442 | 0.75 | 0.300932 |
Target: 5'- --gGACAuGAGGGCcggGGCGCCGCgGGCGg -3' miRNA: 3'- agaCUGU-CUCCUG---CUGCGGUGgCCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 59352 | 0.75 | 0.294153 |
Target: 5'- aUCgggGGCGGAGcGGCGGCGgCAgCGGCGg -3' miRNA: 3'- -AGa--CUGUCUC-CUGCUGCgGUgGCCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 106072 | 0.76 | 0.280954 |
Target: 5'- --cGGCAGGGGcgcCGGCGCCgcgcgGCCGGCGa -3' miRNA: 3'- agaCUGUCUCCu--GCUGCGG-----UGGCCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 14660 | 0.76 | 0.280954 |
Target: 5'- gCUGACGuGAacaucGACGGCGCgGCCGGCGg -3' miRNA: 3'- aGACUGU-CUc----CUGCUGCGgUGGCCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 101382 | 0.77 | 0.250019 |
Target: 5'- ---cGCGGGGGcugcccGCGGCGCCGCCGGCa -3' miRNA: 3'- agacUGUCUCC------UGCUGCGGUGGCCGc -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 132327 | 0.77 | 0.24418 |
Target: 5'- --cGGCGGAGGugcCGGCGCgGCUGGCGg -3' miRNA: 3'- agaCUGUCUCCu--GCUGCGgUGGCCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 50344 | 0.77 | 0.238455 |
Target: 5'- -aUGACGGAGGugGACGaCGgCGGCGc -3' miRNA: 3'- agACUGUCUCCugCUGCgGUgGCCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 32651 | 0.77 | 0.221951 |
Target: 5'- gCUGGagggcGAGGugGACGgCGCCGGCGg -3' miRNA: 3'- aGACUgu---CUCCugCUGCgGUGGCCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 86562 | 0.78 | 0.216669 |
Target: 5'- --gGACGccGAGGACGGCGCCGaagaCGGCGg -3' miRNA: 3'- agaCUGU--CUCCUGCUGCGGUg---GCCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 103623 | 0.78 | 0.211496 |
Target: 5'- --aGGCGGGGGACGACGCCG-CGGaCGa -3' miRNA: 3'- agaCUGUCUCCUGCUGCGGUgGCC-GC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 7384 | 0.78 | 0.201468 |
Target: 5'- gCUGACaguGGAGGACGugGCgCGCuCGGCa -3' miRNA: 3'- aGACUG---UCUCCUGCugCG-GUG-GCCGc -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 27296 | 0.79 | 0.178192 |
Target: 5'- --gGGCgAGAGGACGGCGgUGCCGGCGg -3' miRNA: 3'- agaCUG-UCUCCUGCUGCgGUGGCCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 42606 | 0.81 | 0.135236 |
Target: 5'- -gUGACAG-GGACGGCGCCGCC-GCGg -3' miRNA: 3'- agACUGUCuCCUGCUGCGGUGGcCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 76896 | 0.82 | 0.112212 |
Target: 5'- cCUGACGGAGGGCGGucgcgcgccgccgcUGCCGCCcGGCGg -3' miRNA: 3'- aGACUGUCUCCUGCU--------------GCGGUGG-CCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 134366 | 0.82 | 0.110208 |
Target: 5'- --cGACGacGAGGcCGGCGCCGCCGGCGg -3' miRNA: 3'- agaCUGU--CUCCuGCUGCGGUGGCCGC- -5' |
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6676 | 3' | -58.6 | NC_001847.1 | + | 117856 | 1.09 | 0.001599 |
Target: 5'- cUCUGACAGAGGACGACGCCACCGGCGa -3' miRNA: 3'- -AGACUGUCUCCUGCUGCGGUGGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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