miRNA display CGI


Results 1 - 20 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6676 3' -58.6 NC_001847.1 + 81163 0.74 0.364186
Target:  5'- aCUGGCccgccgcgccgcucGGAGGgcucgcgGCGGCGCCAgCCGGCGc -3'
miRNA:   3'- aGACUG--------------UCUCC-------UGCUGCGGU-GGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 101382 0.77 0.250019
Target:  5'- ---cGCGGGGGcugcccGCGGCGCCGCCGGCa -3'
miRNA:   3'- agacUGUCUCC------UGCUGCGGUGGCCGc -5'
6676 3' -58.6 NC_001847.1 + 14660 0.76 0.280954
Target:  5'- gCUGACGuGAacaucGACGGCGCgGCCGGCGg -3'
miRNA:   3'- aGACUGU-CUc----CUGCUGCGgUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 106072 0.76 0.280954
Target:  5'- --cGGCAGGGGcgcCGGCGCCgcgcgGCCGGCGa -3'
miRNA:   3'- agaCUGUCUCCu--GCUGCGG-----UGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 59352 0.75 0.294153
Target:  5'- aUCgggGGCGGAGcGGCGGCGgCAgCGGCGg -3'
miRNA:   3'- -AGa--CUGUCUC-CUGCUGCgGUgGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 132442 0.75 0.300932
Target:  5'- --gGACAuGAGGGCcggGGCGCCGCgGGCGg -3'
miRNA:   3'- agaCUGU-CUCCUG---CUGCGGUGgCCGC- -5'
6676 3' -58.6 NC_001847.1 + 59896 0.75 0.329983
Target:  5'- gUUGGCgaGGAGGGCGGCGCgcgcgcgcggcgagaGCCGGCGg -3'
miRNA:   3'- aGACUG--UCUCCUGCUGCGg--------------UGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 53835 0.74 0.33663
Target:  5'- gCUGGCGGcGGcaGCGGCGgCGCUGGCGg -3'
miRNA:   3'- aGACUGUCuCC--UGCUGCgGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 69446 0.74 0.344129
Target:  5'- -gUGGCGGAcGGCGGCGCgCGCgCGGCGg -3'
miRNA:   3'- agACUGUCUcCUGCUGCG-GUG-GCCGC- -5'
6676 3' -58.6 NC_001847.1 + 132327 0.77 0.24418
Target:  5'- --cGGCGGAGGugcCGGCGCgGCUGGCGg -3'
miRNA:   3'- agaCUGUCUCCu--GCUGCGgUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 50344 0.77 0.238455
Target:  5'- -aUGACGGAGGugGACGaCGgCGGCGc -3'
miRNA:   3'- agACUGUCUCCugCUGCgGUgGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 32651 0.77 0.221951
Target:  5'- gCUGGagggcGAGGugGACGgCGCCGGCGg -3'
miRNA:   3'- aGACUgu---CUCCugCUGCgGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 95370 0.83 0.101992
Target:  5'- gCUGGCGGcGGACcGCGCCGCCGGCu -3'
miRNA:   3'- aGACUGUCuCCUGcUGCGGUGGCCGc -5'
6676 3' -58.6 NC_001847.1 + 134366 0.82 0.110208
Target:  5'- --cGACGacGAGGcCGGCGCCGCCGGCGg -3'
miRNA:   3'- agaCUGU--CUCCuGCUGCGGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 76896 0.82 0.112212
Target:  5'- cCUGACGGAGGGCGGucgcgcgccgccgcUGCCGCCcGGCGg -3'
miRNA:   3'- aGACUGUCUCCUGCU--------------GCGGUGG-CCGC- -5'
6676 3' -58.6 NC_001847.1 + 42606 0.81 0.135236
Target:  5'- -gUGACAG-GGACGGCGCCGCC-GCGg -3'
miRNA:   3'- agACUGUCuCCUGCUGCGGUGGcCGC- -5'
6676 3' -58.6 NC_001847.1 + 27296 0.79 0.178192
Target:  5'- --gGGCgAGAGGACGGCGgUGCCGGCGg -3'
miRNA:   3'- agaCUG-UCUCCUGCUGCgGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 7384 0.78 0.201468
Target:  5'- gCUGACaguGGAGGACGugGCgCGCuCGGCa -3'
miRNA:   3'- aGACUG---UCUCCUGCugCG-GUG-GCCGc -5'
6676 3' -58.6 NC_001847.1 + 103623 0.78 0.211496
Target:  5'- --aGGCGGGGGACGACGCCG-CGGaCGa -3'
miRNA:   3'- agaCUGUCUCCUGCUGCGGUgGCC-GC- -5'
6676 3' -58.6 NC_001847.1 + 86562 0.78 0.216669
Target:  5'- --gGACGccGAGGACGGCGCCGaagaCGGCGg -3'
miRNA:   3'- agaCUGU--CUCCUGCUGCGGUg---GCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.