miRNA display CGI


Results 1 - 20 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6676 3' -58.6 NC_001847.1 + 116304 0.66 0.818091
Target:  5'- gCUGACccgugcggcgcgcgcGAGGACGccgugcccauGCGCgCGCUGGCGc -3'
miRNA:   3'- aGACUGu--------------CUCCUGC----------UGCG-GUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 14198 0.66 0.799953
Target:  5'- gCUGGCGGcGGGGCuGGCGgUcagGCCGGCc -3'
miRNA:   3'- aGACUGUC-UCCUG-CUGCgG---UGGCCGc -5'
6676 3' -58.6 NC_001847.1 + 21709 0.66 0.791084
Target:  5'- --aGcCGGAGGACcaGCGCCagcagggcgcggGCCGGCGc -3'
miRNA:   3'- agaCuGUCUCCUGc-UGCGG------------UGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 31553 0.82 0.110208
Target:  5'- --cGACGacGAGGcCGGCGCCGCCGGCGg -3'
miRNA:   3'- agaCUGU--CUCCuGCUGCGGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 32837 0.66 0.809539
Target:  5'- aUCUGGgGcGAGGAcuaCGACGCCGggcccaucgaccucaCGGCGg -3'
miRNA:   3'- -AGACUgU-CUCCU---GCUGCGGUg--------------GCCGC- -5'
6676 3' -58.6 NC_001847.1 + 74151 0.66 0.808675
Target:  5'- -aUGGCGGccucGACGGCGCCGUgGGCGc -3'
miRNA:   3'- agACUGUCuc--CUGCUGCGGUGgCCGC- -5'
6676 3' -58.6 NC_001847.1 + 100856 0.66 0.808675
Target:  5'- gCUGACGgccgcGAGcGCGGCGCCcagccGCCGcGCGc -3'
miRNA:   3'- aGACUGU-----CUCcUGCUGCGG-----UGGC-CGC- -5'
6676 3' -58.6 NC_001847.1 + 88940 0.66 0.808675
Target:  5'- --cGGCccGGcGGCGGcCGCCGCCGGCc -3'
miRNA:   3'- agaCUGucUC-CUGCU-GCGGUGGCCGc -5'
6676 3' -58.6 NC_001847.1 + 66979 0.66 0.808675
Target:  5'- gCUG-CAGAGGcgggcuGCGGCGCggCGCCGGa- -3'
miRNA:   3'- aGACuGUCUCC------UGCUGCG--GUGGCCgc -5'
6676 3' -58.6 NC_001847.1 + 48077 0.66 0.799953
Target:  5'- --aGGCGG-GGGCGcACGCCGCgCGGa- -3'
miRNA:   3'- agaCUGUCuCCUGC-UGCGGUG-GCCgc -5'
6676 3' -58.6 NC_001847.1 + 1480 0.66 0.807809
Target:  5'- --cGGCAGAGccgcagcGGCGGCGCCucgggguagaGCCGcGCGu -3'
miRNA:   3'- agaCUGUCUC-------CUGCUGCGG----------UGGC-CGC- -5'
6676 3' -58.6 NC_001847.1 + 29881 0.66 0.808675
Target:  5'- --gGACGG-GGACGGCGaggcggcggccCUGCCGGCc -3'
miRNA:   3'- agaCUGUCuCCUGCUGC-----------GGUGGCCGc -5'
6676 3' -58.6 NC_001847.1 + 69212 0.66 0.817243
Target:  5'- cCUgGGCGuccgcGGGGAacgcCGACGCCGCgaCGGCGa -3'
miRNA:   3'- aGA-CUGU-----CUCCU----GCUGCGGUG--GCCGC- -5'
6676 3' -58.6 NC_001847.1 + 81282 0.66 0.799953
Target:  5'- ---cGCGGcGGuCGGCGCCGCCaGCGc -3'
miRNA:   3'- agacUGUCuCCuGCUGCGGUGGcCGC- -5'
6676 3' -58.6 NC_001847.1 + 37094 0.66 0.817243
Target:  5'- cCUGagcGCGGAGaGCGGC-CCGCUGGUGu -3'
miRNA:   3'- aGAC---UGUCUCcUGCUGcGGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 95786 0.66 0.808675
Target:  5'- ---nGCGGGGGGCGGCGCgggcgcauUACUGGUGc -3'
miRNA:   3'- agacUGUCUCCUGCUGCG--------GUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 72434 0.66 0.799953
Target:  5'- -gUGcuCAGAGuGACG-CGCCuGCCGGCc -3'
miRNA:   3'- agACu-GUCUC-CUGCuGCGG-UGGCCGc -5'
6676 3' -58.6 NC_001847.1 + 27689 0.66 0.791084
Target:  5'- gUCgGGCuGAGG-CG-CGCgagCGCCGGCGg -3'
miRNA:   3'- -AGaCUGuCUCCuGCuGCG---GUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 2761 0.66 0.817243
Target:  5'- --cGGCGGcgccGGcgcCGGCGCCcccGCCGGCGg -3'
miRNA:   3'- agaCUGUCu---CCu--GCUGCGG---UGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 103165 0.66 0.808675
Target:  5'- --cGGCucGAGGGCGGCGuCCACgGGg- -3'
miRNA:   3'- agaCUGu-CUCCUGCUGC-GGUGgCCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.