miRNA display CGI


Results 21 - 40 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6676 3' -58.6 NC_001847.1 + 59544 0.66 0.808675
Target:  5'- -aUGGCAGgcggugGGGGCGGCGggggcgguGCCGGCGg -3'
miRNA:   3'- agACUGUC------UCCUGCUGCgg------UGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 62474 0.66 0.808675
Target:  5'- ---aGCAG-GGcCGGgGUCGCCGGCGg -3'
miRNA:   3'- agacUGUCuCCuGCUgCGGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 132694 0.66 0.808675
Target:  5'- --gGACGG-GGACGGCGaggcggcggccCUGCCGGCc -3'
miRNA:   3'- agaCUGUCuCCUGCUGC-----------GGUGGCCGc -5'
6676 3' -58.6 NC_001847.1 + 124748 0.66 0.808675
Target:  5'- --gGAgAGAGGACcgcggcucgcgGGCGgCACCGGgGg -3'
miRNA:   3'- agaCUgUCUCCUG-----------CUGCgGUGGCCgC- -5'
6676 3' -58.6 NC_001847.1 + 17810 0.66 0.808675
Target:  5'- ---cGCGGGGGGCGAgGCCGCCccccGCc -3'
miRNA:   3'- agacUGUCUCCUGCUgCGGUGGc---CGc -5'
6676 3' -58.6 NC_001847.1 + 78644 0.66 0.808675
Target:  5'- uUUUGGCGGcgcGGuCGcgcgcgccuGCGUCGCCGGCGu -3'
miRNA:   3'- -AGACUGUCu--CCuGC---------UGCGGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 21199 0.66 0.808675
Target:  5'- --cGGCGGcguAGGA-GACGCCGCC-GCGa -3'
miRNA:   3'- agaCUGUC---UCCUgCUGCGGUGGcCGC- -5'
6676 3' -58.6 NC_001847.1 + 1480 0.66 0.807809
Target:  5'- --cGGCAGAGccgcagcGGCGGCGCCucgggguagaGCCGcGCGu -3'
miRNA:   3'- agaCUGUCUC-------CUGCUGCGG----------UGGC-CGC- -5'
6676 3' -58.6 NC_001847.1 + 36097 0.66 0.807809
Target:  5'- cCUGGCGGGcauuuuuauccgcGGGCGGugcuCGCCGCCcgaGGCa -3'
miRNA:   3'- aGACUGUCU-------------CCUGCU----GCGGUGG---CCGc -5'
6676 3' -58.6 NC_001847.1 + 80844 0.66 0.807809
Target:  5'- --gGGCAGAuccGGGCGGCggcgcgcgucgagGCCGuCCGGCa -3'
miRNA:   3'- agaCUGUCU---CCUGCUG-------------CGGU-GGCCGc -5'
6676 3' -58.6 NC_001847.1 + 104293 0.66 0.807809
Target:  5'- --cGGCAGAGccgcagcGGCGGCGCCucgggguagaGCCGcGCGu -3'
miRNA:   3'- agaCUGUCUC-------CUGCUGCGG----------UGGC-CGC- -5'
6676 3' -58.6 NC_001847.1 + 8073 0.66 0.799953
Target:  5'- ---cGCAGAGGGgGGCaCCGCCgcGGCGa -3'
miRNA:   3'- agacUGUCUCCUgCUGcGGUGG--CCGC- -5'
6676 3' -58.6 NC_001847.1 + 43235 0.66 0.799953
Target:  5'- -gUGGCGGugGGGGCG-CGCgGgCGGCGc -3'
miRNA:   3'- agACUGUC--UCCUGCuGCGgUgGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 96525 0.66 0.799953
Target:  5'- --gGGCGGcaacGGACcGCGCgCGCCGGCu -3'
miRNA:   3'- agaCUGUCu---CCUGcUGCG-GUGGCCGc -5'
6676 3' -58.6 NC_001847.1 + 25744 0.66 0.799953
Target:  5'- --cGGCGGcGGGCGGCgGCgGCaCGGCa -3'
miRNA:   3'- agaCUGUCuCCUGCUG-CGgUG-GCCGc -5'
6676 3' -58.6 NC_001847.1 + 67966 0.66 0.799953
Target:  5'- --cGGCAGGGGGu--CGCCGCCGagaGCGg -3'
miRNA:   3'- agaCUGUCUCCUgcuGCGGUGGC---CGC- -5'
6676 3' -58.6 NC_001847.1 + 15065 0.66 0.799953
Target:  5'- aUCUGACcggcggcccGGGGAU--CGCCugCGGCa -3'
miRNA:   3'- -AGACUGu--------CUCCUGcuGCGGugGCCGc -5'
6676 3' -58.6 NC_001847.1 + 11144 0.66 0.799953
Target:  5'- --cGGCGGAGcuGCGGCGgcuaaaCUACCGGCGu -3'
miRNA:   3'- agaCUGUCUCc-UGCUGC------GGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 81282 0.66 0.799953
Target:  5'- ---cGCGGcGGuCGGCGCCGCCaGCGc -3'
miRNA:   3'- agacUGUCuCCuGCUGCGGUGGcCGC- -5'
6676 3' -58.6 NC_001847.1 + 91053 0.66 0.799953
Target:  5'- --aGGCGGcGGGCgcaGACGCCGCagcaGGCa -3'
miRNA:   3'- agaCUGUCuCCUG---CUGCGGUGg---CCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.