miRNA display CGI


Results 41 - 60 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6676 3' -58.6 NC_001847.1 + 21709 0.66 0.791084
Target:  5'- --aGcCGGAGGACcaGCGCCagcagggcgcggGCCGGCGc -3'
miRNA:   3'- agaCuGUCUCCUGc-UGCGG------------UGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 21758 0.67 0.725612
Target:  5'- ---cGCGGGGGGgccgcCGGCGCCGggcCCGGCGc -3'
miRNA:   3'- agacUGUCUCCU-----GCUGCGGU---GGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 21931 0.7 0.540637
Target:  5'- --aGGCGGAGGagaggaccgcggcucGCGGCGgCACCGGgGg -3'
miRNA:   3'- agaCUGUCUCC---------------UGCUGCgGUGGCCgC- -5'
6676 3' -58.6 NC_001847.1 + 22117 0.7 0.576132
Target:  5'- --cGACAGcGGGCG-CGCCcugggcCCGGCGg -3'
miRNA:   3'- agaCUGUCuCCUGCuGCGGu-----GGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 22362 0.7 0.536736
Target:  5'- gCUGGCAGAcuacugGGACGAgGCCcccgcgggGCCGGgGu -3'
miRNA:   3'- aGACUGUCU------CCUGCUgCGG--------UGGCCgC- -5'
6676 3' -58.6 NC_001847.1 + 24835 0.71 0.488901
Target:  5'- -gUGGgaGGGGGAUGGCGCCAuCUGGUGg -3'
miRNA:   3'- agACUg-UCUCCUGCUGCGGU-GGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 25315 0.69 0.646288
Target:  5'- --cGAC-GAGGGCG-CGCCcaaagGCCGGCu -3'
miRNA:   3'- agaCUGuCUCCUGCuGCGG-----UGGCCGc -5'
6676 3' -58.6 NC_001847.1 + 25369 0.72 0.470327
Target:  5'- -aUGGCAGGGGGCGGCGgCAg-GGCGg -3'
miRNA:   3'- agACUGUCUCCUGCUGCgGUggCCGC- -5'
6676 3' -58.6 NC_001847.1 + 25744 0.66 0.799953
Target:  5'- --cGGCGGcGGGCGGCgGCgGCaCGGCa -3'
miRNA:   3'- agaCUGUCuCCUGCUG-CGgUG-GCCGc -5'
6676 3' -58.6 NC_001847.1 + 27296 0.79 0.178192
Target:  5'- --gGGCgAGAGGACGGCGgUGCCGGCGg -3'
miRNA:   3'- agaCUG-UCUCCUGCUGCgGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 27406 0.69 0.596084
Target:  5'- -----gGGGGGGCGcuguUGCCGCCGGCGc -3'
miRNA:   3'- agacugUCUCCUGCu---GCGGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 27499 0.73 0.416899
Target:  5'- --cGGCAGAGGccuCGGcCGCCGCCgcGGCGg -3'
miRNA:   3'- agaCUGUCUCCu--GCU-GCGGUGG--CCGC- -5'
6676 3' -58.6 NC_001847.1 + 27689 0.66 0.791084
Target:  5'- gUCgGGCuGAGG-CG-CGCgagCGCCGGCGg -3'
miRNA:   3'- -AGaCUGuCUCCuGCuGCG---GUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 27713 0.69 0.606101
Target:  5'- --cGGCGGGGGcaAgGGCGUCAgCGGCGg -3'
miRNA:   3'- agaCUGUCUCC--UgCUGCGGUgGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 27765 0.68 0.656326
Target:  5'- --gGACGcggagagcagcGAGGACGACGgCGCCGGa- -3'
miRNA:   3'- agaCUGU-----------CUCCUGCUGCgGUGGCCgc -5'
6676 3' -58.6 NC_001847.1 + 28051 0.67 0.734306
Target:  5'- --aGGCGG-GGGCGGCGCCccucaagGCCGaaGCGg -3'
miRNA:   3'- agaCUGUCuCCUGCUGCGG-------UGGC--CGC- -5'
6676 3' -58.6 NC_001847.1 + 28090 0.71 0.507812
Target:  5'- --aGGCGGGGGGCGGCggugcccucgggGCCaggaccgagGCCGGCGa -3'
miRNA:   3'- agaCUGUCUCCUGCUG------------CGG---------UGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 28502 0.66 0.782077
Target:  5'- uUCUGGC-GAGG-CGugGCC--CGGCa -3'
miRNA:   3'- -AGACUGuCUCCuGCugCGGugGCCGc -5'
6676 3' -58.6 NC_001847.1 + 28565 0.66 0.782077
Target:  5'- --cGAC-GAGGAcaCGGCGCCgggGCUGGCu -3'
miRNA:   3'- agaCUGuCUCCU--GCUGCGG---UGGCCGc -5'
6676 3' -58.6 NC_001847.1 + 28994 0.71 0.527027
Target:  5'- -aUGGCcuacccGGAGGcCGGCGCCGgCGGCa -3'
miRNA:   3'- agACUG------UCUCCuGCUGCGGUgGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.