Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6676 | 5' | -58.2 | NC_001847.1 | + | 102242 | 0.72 | 0.40589 |
Target: 5'- cGCGGCcccgGCUUCCCCGCCg------- -3' miRNA: 3'- aCGCCGa---CGAAGGGGCGGgaacaacu -5' |
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6676 | 5' | -58.2 | NC_001847.1 | + | 63286 | 0.66 | 0.749349 |
Target: 5'- cGCGGCcGCUUCCaCCGCU---GggGAg -3' miRNA: 3'- aCGCCGaCGAAGG-GGCGGgaaCaaCU- -5' |
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6676 | 5' | -58.2 | NC_001847.1 | + | 81760 | 0.67 | 0.729784 |
Target: 5'- cUGCGGCgccggcaGCUagCCCUGCCCgcGUaUGAc -3' miRNA: 3'- -ACGCCGa------CGAa-GGGGCGGGaaCA-ACU- -5' |
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6676 | 5' | -58.2 | NC_001847.1 | + | 91640 | 0.67 | 0.71987 |
Target: 5'- cUGCGGCUGCggcucuugCUUCGCCCUc----- -3' miRNA: 3'- -ACGCCGACGaa------GGGGCGGGAacaacu -5' |
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6676 | 5' | -58.2 | NC_001847.1 | + | 88511 | 0.67 | 0.71987 |
Target: 5'- gGCGGCUGCgacgCCaaguuCGCCCUcGUa-- -3' miRNA: 3'- aCGCCGACGaa--GGg----GCGGGAaCAacu -5' |
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6676 | 5' | -58.2 | NC_001847.1 | + | 20030 | 0.67 | 0.71987 |
Target: 5'- gGCGGCccUGCggCCgCCGCCCUg----- -3' miRNA: 3'- aCGCCG--ACGaaGG-GGCGGGAacaacu -5' |
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6676 | 5' | -58.2 | NC_001847.1 | + | 81367 | 0.67 | 0.699822 |
Target: 5'- gGCGGCUGCggugCUgCCGCCCUc----- -3' miRNA: 3'- aCGCCGACGaa--GG-GGCGGGAacaacu -5' |
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6676 | 5' | -58.2 | NC_001847.1 | + | 39183 | 0.67 | 0.699822 |
Target: 5'- aGCGGCUGCUgcgcucacgcUCgCCCGCCagcGUUc- -3' miRNA: 3'- aCGCCGACGA----------AG-GGGCGGgaaCAAcu -5' |
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6676 | 5' | -58.2 | NC_001847.1 | + | 22824 | 0.68 | 0.679546 |
Target: 5'- gGCGGCcGC-UCCCCGCCgagguaGUUGu -3' miRNA: 3'- aCGCCGaCGaAGGGGCGGgaa---CAACu -5' |
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6676 | 5' | -58.2 | NC_001847.1 | + | 13954 | 0.68 | 0.63859 |
Target: 5'- cUGCGGCUGCggCccgugggagCCCGCCCcUGg--- -3' miRNA: 3'- -ACGCCGACGaaG---------GGGCGGGaACaacu -5' |
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6676 | 5' | -58.2 | NC_001847.1 | + | 2475 | 0.68 | 0.63859 |
Target: 5'- gGCGGCgGCgcCCCCGCCgCcgUG-UGAa -3' miRNA: 3'- aCGCCGaCGaaGGGGCGG-Ga-ACaACU- -5' |
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6676 | 5' | -58.2 | NC_001847.1 | + | 1066 | 0.69 | 0.587335 |
Target: 5'- gGCGGCgccggGCUguucgcugcUCCCCGCCUg---UGAc -3' miRNA: 3'- aCGCCGa----CGA---------AGGGGCGGGaacaACU- -5' |
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6676 | 5' | -58.2 | NC_001847.1 | + | 92598 | 0.69 | 0.56701 |
Target: 5'- cGCGGCcGCgUCCUCGCCCUc----- -3' miRNA: 3'- aCGCCGaCGaAGGGGCGGGAacaacu -5' |
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6676 | 5' | -58.2 | NC_001847.1 | + | 87071 | 0.69 | 0.56701 |
Target: 5'- cGCGGCgUGCgcCCCCGCCUUUc---- -3' miRNA: 3'- aCGCCG-ACGaaGGGGCGGGAAcaacu -5' |
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6676 | 5' | -58.2 | NC_001847.1 | + | 134388 | 0.69 | 0.56701 |
Target: 5'- gGCGGCggGCcggCCUCGCCCUaGggGGg -3' miRNA: 3'- aCGCCGa-CGaa-GGGGCGGGAaCaaCU- -5' |
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6676 | 5' | -58.2 | NC_001847.1 | + | 44815 | 0.69 | 0.56701 |
Target: 5'- gGCGGCUGCgcCCCCgGCCCc------ -3' miRNA: 3'- aCGCCGACGaaGGGG-CGGGaacaacu -5' |
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6676 | 5' | -58.2 | NC_001847.1 | + | 44655 | 0.7 | 0.536883 |
Target: 5'- --aGGCUGCUgCCCCGCCUgcaccgUGAc -3' miRNA: 3'- acgCCGACGAaGGGGCGGGaaca--ACU- -5' |
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6676 | 5' | -58.2 | NC_001847.1 | + | 117430 | 0.71 | 0.478491 |
Target: 5'- cGCGGCUGCgcCCUgGCCCUc-UUGGa -3' miRNA: 3'- aCGCCGACGaaGGGgCGGGAacAACU- -5' |
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6676 | 5' | -58.2 | NC_001847.1 | + | 32111 | 0.72 | 0.441346 |
Target: 5'- cGCGGCUGCgg-CCCGCCCg------ -3' miRNA: 3'- aCGCCGACGaagGGGCGGGaacaacu -5' |
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6676 | 5' | -58.2 | NC_001847.1 | + | 117890 | 1.09 | 0.001437 |
Target: 5'- cUGCGGCUGCUUCCCCGCCCUUGUUGAg -3' miRNA: 3'- -ACGCCGACGAAGGGGCGGGAACAACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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