miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6676 5' -58.2 NC_001847.1 + 1066 0.69 0.587335
Target:  5'- gGCGGCgccggGCUguucgcugcUCCCCGCCUg---UGAc -3'
miRNA:   3'- aCGCCGa----CGA---------AGGGGCGGGaacaACU- -5'
6676 5' -58.2 NC_001847.1 + 2475 0.68 0.63859
Target:  5'- gGCGGCgGCgcCCCCGCCgCcgUG-UGAa -3'
miRNA:   3'- aCGCCGaCGaaGGGGCGG-Ga-ACaACU- -5'
6676 5' -58.2 NC_001847.1 + 13954 0.68 0.63859
Target:  5'- cUGCGGCUGCggCccgugggagCCCGCCCcUGg--- -3'
miRNA:   3'- -ACGCCGACGaaG---------GGGCGGGaACaacu -5'
6676 5' -58.2 NC_001847.1 + 16466 0.69 0.60779
Target:  5'- cUGCGGCccgGCccaacCCCCGCCCUgccUGGg -3'
miRNA:   3'- -ACGCCGa--CGaa---GGGGCGGGAacaACU- -5'
6676 5' -58.2 NC_001847.1 + 20030 0.67 0.71987
Target:  5'- gGCGGCccUGCggCCgCCGCCCUg----- -3'
miRNA:   3'- aCGCCG--ACGaaGG-GGCGGGAacaacu -5'
6676 5' -58.2 NC_001847.1 + 22824 0.68 0.679546
Target:  5'- gGCGGCcGC-UCCCCGCCgagguaGUUGu -3'
miRNA:   3'- aCGCCGaCGaAGGGGCGGgaa---CAACu -5'
6676 5' -58.2 NC_001847.1 + 31575 0.69 0.56701
Target:  5'- gGCGGCggGCcggCCUCGCCCUaGggGGg -3'
miRNA:   3'- aCGCCGa-CGaa-GGGGCGGGAaCaaCU- -5'
6676 5' -58.2 NC_001847.1 + 32111 0.72 0.441346
Target:  5'- cGCGGCUGCgg-CCCGCCCg------ -3'
miRNA:   3'- aCGCCGACGaagGGGCGGGaacaacu -5'
6676 5' -58.2 NC_001847.1 + 34603 0.72 0.423396
Target:  5'- cGCGGCcgGC-UCCCCGCCCa------ -3'
miRNA:   3'- aCGCCGa-CGaAGGGGCGGGaacaacu -5'
6676 5' -58.2 NC_001847.1 + 39183 0.67 0.699822
Target:  5'- aGCGGCUGCUgcgcucacgcUCgCCCGCCagcGUUc- -3'
miRNA:   3'- aCGCCGACGA----------AG-GGGCGGgaaCAAcu -5'
6676 5' -58.2 NC_001847.1 + 40330 0.68 0.679546
Target:  5'- aGCGGCUGCggCCCuCGgcgaCCUUGa--- -3'
miRNA:   3'- aCGCCGACGaaGGG-GCg---GGAACaacu -5'
6676 5' -58.2 NC_001847.1 + 44655 0.7 0.536883
Target:  5'- --aGGCUGCUgCCCCGCCUgcaccgUGAc -3'
miRNA:   3'- acgCCGACGAaGGGGCGGGaaca--ACU- -5'
6676 5' -58.2 NC_001847.1 + 44815 0.69 0.56701
Target:  5'- gGCGGCUGCgcCCCCgGCCCc------ -3'
miRNA:   3'- aCGCCGACGaaGGGG-CGGGaacaacu -5'
6676 5' -58.2 NC_001847.1 + 47221 0.69 0.601643
Target:  5'- cGCGGCcGCgcccagccccacgCCCCGCCCcUGUg-- -3'
miRNA:   3'- aCGCCGaCGaa-----------GGGGCGGGaACAacu -5'
6676 5' -58.2 NC_001847.1 + 47734 0.7 0.50733
Target:  5'- cGCGGCggGCggggCCCCGCCCg------ -3'
miRNA:   3'- aCGCCGa-CGaa--GGGGCGGGaacaacu -5'
6676 5' -58.2 NC_001847.1 + 57520 0.66 0.777895
Target:  5'- gGCGGC-GCgccgUCCUCGCCCa------ -3'
miRNA:   3'- aCGCCGaCGa---AGGGGCGGGaacaacu -5'
6676 5' -58.2 NC_001847.1 + 60660 0.66 0.787159
Target:  5'- cGCGGCcGCgUCCgCGCCCUc----- -3'
miRNA:   3'- aCGCCGaCGaAGGgGCGGGAacaacu -5'
6676 5' -58.2 NC_001847.1 + 62452 0.66 0.768499
Target:  5'- gGCGGCcGCUcUCCCCGgCCUc----- -3'
miRNA:   3'- aCGCCGaCGA-AGGGGCgGGAacaacu -5'
6676 5' -58.2 NC_001847.1 + 63286 0.66 0.749349
Target:  5'- cGCGGCcGCUUCCaCCGCU---GggGAg -3'
miRNA:   3'- aCGCCGaCGAAGG-GGCGGgaaCaaCU- -5'
6676 5' -58.2 NC_001847.1 + 77096 0.68 0.683616
Target:  5'- cGCGaGCUGCgucagccgggucgCCagcagcgggCCGCCCUUGUUGc -3'
miRNA:   3'- aCGC-CGACGaa-----------GG---------GGCGGGAACAACu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.