miRNA display CGI


Results 21 - 40 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6676 5' -58.2 NC_001847.1 + 80595 0.66 0.787159
Target:  5'- cGCGaCUGCgucuUCCCCGCCCc------ -3'
miRNA:   3'- aCGCcGACGa---AGGGGCGGGaacaacu -5'
6676 5' -58.2 NC_001847.1 + 81367 0.67 0.699822
Target:  5'- gGCGGCUGCggugCUgCCGCCCUc----- -3'
miRNA:   3'- aCGCCGACGaa--GG-GGCGGGAacaacu -5'
6676 5' -58.2 NC_001847.1 + 81760 0.67 0.729784
Target:  5'- cUGCGGCgccggcaGCUagCCCUGCCCgcGUaUGAc -3'
miRNA:   3'- -ACGCCGa------CGAa-GGGGCGGGaaCA-ACU- -5'
6676 5' -58.2 NC_001847.1 + 84687 0.66 0.758981
Target:  5'- cUGCGGCaGCggcUUgCCGUCCUUGUc-- -3'
miRNA:   3'- -ACGCCGaCGa--AGgGGCGGGAACAacu -5'
6676 5' -58.2 NC_001847.1 + 87071 0.69 0.56701
Target:  5'- cGCGGCgUGCgcCCCCGCCUUUc---- -3'
miRNA:   3'- aCGCCG-ACGaaGGGGCGGGAAcaacu -5'
6676 5' -58.2 NC_001847.1 + 87586 0.67 0.739614
Target:  5'- cGCGGCcgccggGCUcCCCgCGCCCgccgUGcUGGa -3'
miRNA:   3'- aCGCCGa-----CGAaGGG-GCGGGa---ACaACU- -5'
6676 5' -58.2 NC_001847.1 + 88511 0.67 0.71987
Target:  5'- gGCGGCUGCgacgCCaaguuCGCCCUcGUa-- -3'
miRNA:   3'- aCGCCGACGaa--GGg----GCGGGAaCAacu -5'
6676 5' -58.2 NC_001847.1 + 91640 0.67 0.71987
Target:  5'- cUGCGGCUGCggcucuugCUUCGCCCUc----- -3'
miRNA:   3'- -ACGCCGACGaa------GGGGCGGGAacaacu -5'
6676 5' -58.2 NC_001847.1 + 92598 0.69 0.56701
Target:  5'- cGCGGCcGCgUCCUCGCCCUc----- -3'
miRNA:   3'- aCGCCGaCGaAGGGGCGGGAacaacu -5'
6676 5' -58.2 NC_001847.1 + 99166 0.68 0.63859
Target:  5'- cGCGGCUGCgcgcgCCUuggCGCCCUcGUg-- -3'
miRNA:   3'- aCGCCGACGaa---GGG---GCGGGAaCAacu -5'
6676 5' -58.2 NC_001847.1 + 100074 0.66 0.777895
Target:  5'- uUGCcuGGCUGCUUgCCCCGUUUgcgUGgaaUGAg -3'
miRNA:   3'- -ACG--CCGACGAA-GGGGCGGGa--ACa--ACU- -5'
6676 5' -58.2 NC_001847.1 + 102242 0.72 0.40589
Target:  5'- cGCGGCcccgGCUUCCCCGCCg------- -3'
miRNA:   3'- aCGCCGa---CGAAGGGGCGGgaacaacu -5'
6676 5' -58.2 NC_001847.1 + 103114 0.68 0.659112
Target:  5'- cGCGGggGCUUCCCCGCgCg------ -3'
miRNA:   3'- aCGCCgaCGAAGGGGCGgGaacaacu -5'
6676 5' -58.2 NC_001847.1 + 116108 0.68 0.648858
Target:  5'- cUGCgGGCUGCUUCUCgGCCUUUc---- -3'
miRNA:   3'- -ACG-CCGACGAAGGGgCGGGAAcaacu -5'
6676 5' -58.2 NC_001847.1 + 117430 0.71 0.478491
Target:  5'- cGCGGCUGCgcCCUgGCCCUc-UUGGa -3'
miRNA:   3'- aCGCCGACGaaGGGgCGGGAacAACU- -5'
6676 5' -58.2 NC_001847.1 + 117890 1.09 0.001437
Target:  5'- cUGCGGCUGCUUCCCCGCCCUUGUUGAg -3'
miRNA:   3'- -ACGCCGACGAAGGGGCGGGAACAACU- -5'
6676 5' -58.2 NC_001847.1 + 118980 0.68 0.648858
Target:  5'- cGCGGCcaacgggGCggucgCCCCGgCCUUGUUc- -3'
miRNA:   3'- aCGCCGa------CGaa---GGGGCgGGAACAAcu -5'
6676 5' -58.2 NC_001847.1 + 125043 0.74 0.310946
Target:  5'- gGCGGCU--UUCCCCGCCgCUUGUg-- -3'
miRNA:   3'- aCGCCGAcgAAGGGGCGG-GAACAacu -5'
6676 5' -58.2 NC_001847.1 + 131742 0.66 0.787159
Target:  5'- --gGGCUGCUcUCCCGCUgCUUGcgGAg -3'
miRNA:   3'- acgCCGACGAaGGGGCGG-GAACaaCU- -5'
6676 5' -58.2 NC_001847.1 + 134388 0.69 0.56701
Target:  5'- gGCGGCggGCcggCCUCGCCCUaGggGGg -3'
miRNA:   3'- aCGCCGa-CGaa-GGGGCGGGAaCaaCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.