miRNA display CGI


Results 61 - 80 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6677 3' -53.9 NC_001847.1 + 93692 0.66 0.936995
Target:  5'- aGCUCU--CGuuccgguucauGGGCCCcgGCGAcuCGCa -3'
miRNA:   3'- gCGAGAauGC-----------UCCGGGa-CGCUuuGCG- -5'
6677 3' -53.9 NC_001847.1 + 1427 0.66 0.936995
Target:  5'- cCGCgg-UGCGcGGGCCCagGCGcGugGCc -3'
miRNA:   3'- -GCGagaAUGC-UCCGGGa-CGCuUugCG- -5'
6677 3' -53.9 NC_001847.1 + 81818 0.66 0.936995
Target:  5'- cCGCUgcgGCGuGGUCCagGCGAgguccAGCGCg -3'
miRNA:   3'- -GCGAgaaUGCuCCGGGa-CGCU-----UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 8250 0.66 0.936995
Target:  5'- aGCUCUcACGAccGuGCCC-GUGAGaACGCu -3'
miRNA:   3'- gCGAGAaUGCU--C-CGGGaCGCUU-UGCG- -5'
6677 3' -53.9 NC_001847.1 + 104240 0.66 0.936995
Target:  5'- cCGCgg-UGCGcGGGCCCagGCGcGugGCc -3'
miRNA:   3'- -GCGagaAUGC-UCCGGGa-CGCuUugCG- -5'
6677 3' -53.9 NC_001847.1 + 12017 0.66 0.936995
Target:  5'- cCGUUCcaGCGccccucuGCCCgGCGGAGCGCu -3'
miRNA:   3'- -GCGAGaaUGCuc-----CGGGaCGCUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 34104 0.66 0.936995
Target:  5'- gGCUCgcGCGGcGGCggagCCUGCG--GCGCc -3'
miRNA:   3'- gCGAGaaUGCU-CCG----GGACGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 74260 0.66 0.936995
Target:  5'- cCGCcgCUgcUGGGGCCC-GCGc-GCGCg -3'
miRNA:   3'- -GCGa-GAauGCUCCGGGaCGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 111063 0.66 0.936995
Target:  5'- aGCUCUcACGAccGuGCCC-GUGAGaACGCu -3'
miRNA:   3'- gCGAGAaUGCU--C-CGGGaCGCUU-UGCG- -5'
6677 3' -53.9 NC_001847.1 + 70471 0.66 0.936995
Target:  5'- aCGC----GCGGGcGCCCgGUGGAugGCg -3'
miRNA:   3'- -GCGagaaUGCUC-CGGGaCGCUUugCG- -5'
6677 3' -53.9 NC_001847.1 + 105625 0.66 0.936995
Target:  5'- cCGCgCggGCGA-GCUCUGCGGccgaAGCGCc -3'
miRNA:   3'- -GCGaGaaUGCUcCGGGACGCU----UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 21850 0.67 0.933991
Target:  5'- gCGCUCggugcagcagguggUGCGGGGgC-UGCGgcGCGCu -3'
miRNA:   3'- -GCGAGa-------------AUGCUCCgGgACGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 45136 0.67 0.931938
Target:  5'- aGCUCggcgccuucUGCGGGgugcaGCCCcGCGgcGCGCa -3'
miRNA:   3'- gCGAGa--------AUGCUC-----CGGGaCGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 35939 0.67 0.931938
Target:  5'- gCGCgcgCUUGCGccuGGGCgCUGCuGGcGGCGCu -3'
miRNA:   3'- -GCGa--GAAUGC---UCCGgGACG-CU-UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 13396 0.67 0.931938
Target:  5'- gCGCgcc-GCG-GGCCCUGgGAGaaagacggGCGCg -3'
miRNA:   3'- -GCGagaaUGCuCCGGGACgCUU--------UGCG- -5'
6677 3' -53.9 NC_001847.1 + 44026 0.67 0.931938
Target:  5'- uGUUUUUA-GAGGgCUgcaGCGAGGCGCg -3'
miRNA:   3'- gCGAGAAUgCUCCgGGa--CGCUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 59718 0.67 0.931938
Target:  5'- gCGCUCgccugcaggUACGuguGGCCC-GCGAugccCGCc -3'
miRNA:   3'- -GCGAGa--------AUGCu--CCGGGaCGCUuu--GCG- -5'
6677 3' -53.9 NC_001847.1 + 95329 0.67 0.931938
Target:  5'- gCGCUC-----GGGCCCgccGCGGacGACGCg -3'
miRNA:   3'- -GCGAGaaugcUCCGGGa--CGCU--UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 121099 0.67 0.931938
Target:  5'- gCGCUCUgcgccGCGAcGGUaaaCUGCGcgcuGCGCc -3'
miRNA:   3'- -GCGAGAa----UGCU-CCGg--GACGCuu--UGCG- -5'
6677 3' -53.9 NC_001847.1 + 33475 0.67 0.931938
Target:  5'- gGCUCgcuuCGAGGCgauguCCgcgGCGGcGGCGCg -3'
miRNA:   3'- gCGAGaau-GCUCCG-----GGa--CGCU-UUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.