miRNA display CGI


Results 41 - 60 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6677 3' -53.9 NC_001847.1 + 13271 0.66 0.946372
Target:  5'- uGCUgacUGCGGugccGGCCCUGUGc-GCGCg -3'
miRNA:   3'- gCGAga-AUGCU----CCGGGACGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 87453 0.66 0.946372
Target:  5'- gCGCUCaac---GGCCCcGCGgcGCGCg -3'
miRNA:   3'- -GCGAGaaugcuCCGGGaCGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 116587 0.66 0.945926
Target:  5'- gCGCUCUggGCGcAGcgcugccGCUCUGCG--GCGCg -3'
miRNA:   3'- -GCGAGAa-UGC-UC-------CGGGACGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 8118 0.66 0.945926
Target:  5'- gCGCaggcGCGGGGCCCcagggGCGGGcggugcuGCGCg -3'
miRNA:   3'- -GCGagaaUGCUCCGGGa----CGCUU-------UGCG- -5'
6677 3' -53.9 NC_001847.1 + 131970 0.66 0.941806
Target:  5'- uCGC-CUgccGCGAGGCgCUG-GAGGCGg -3'
miRNA:   3'- -GCGaGAa--UGCUCCGgGACgCUUUGCg -5'
6677 3' -53.9 NC_001847.1 + 124894 0.66 0.941806
Target:  5'- gGCUCcgaaaaGCG-GGCCCgGC-AGGCGCg -3'
miRNA:   3'- gCGAGaa----UGCuCCGGGaCGcUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 82084 0.66 0.941806
Target:  5'- gCGCgUCUgACGccgucgccggaGGGCgCCUGCGuuuGCGCc -3'
miRNA:   3'- -GCG-AGAaUGC-----------UCCG-GGACGCuu-UGCG- -5'
6677 3' -53.9 NC_001847.1 + 69403 0.66 0.941806
Target:  5'- gGCcUUUGCG-GGCCCggcgcuguuccUGCGGcucAGCGCg -3'
miRNA:   3'- gCGaGAAUGCuCCGGG-----------ACGCU---UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 38414 0.66 0.941806
Target:  5'- uGCUCUcgcUugGGGGgCC-GaCGAGugGCu -3'
miRNA:   3'- gCGAGA---AugCUCCgGGaC-GCUUugCG- -5'
6677 3' -53.9 NC_001847.1 + 22081 0.66 0.941806
Target:  5'- gGCUCcgaaaaGCG-GGCCCgGC-AGGCGCg -3'
miRNA:   3'- gCGAGaa----UGCuCCGGGaCGcUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 64336 0.66 0.941806
Target:  5'- gCGCUCg-GCGGauccccucccGGCCCcgccGCGAAGCGa -3'
miRNA:   3'- -GCGAGaaUGCU----------CCGGGa---CGCUUUGCg -5'
6677 3' -53.9 NC_001847.1 + 29157 0.66 0.941806
Target:  5'- uCGC-CUgccGCGAGGCgCUG-GAGGCGg -3'
miRNA:   3'- -GCGaGAa--UGCUCCGgGACgCUUUGCg -5'
6677 3' -53.9 NC_001847.1 + 50979 0.66 0.941806
Target:  5'- cCGCgUCUagggcUACGAGGUCCc-CGgcGCGCg -3'
miRNA:   3'- -GCG-AGA-----AUGCUCCGGGacGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 64009 0.66 0.941806
Target:  5'- uGCUCgc-CGGGGUCg-GCGAcguACGCg -3'
miRNA:   3'- gCGAGaauGCUCCGGgaCGCUu--UGCG- -5'
6677 3' -53.9 NC_001847.1 + 60515 0.66 0.941806
Target:  5'- cCGcCUCgcGCGAGGCgCUGCccAGCuGCa -3'
miRNA:   3'- -GC-GAGaaUGCUCCGgGACGcuUUG-CG- -5'
6677 3' -53.9 NC_001847.1 + 46691 0.66 0.941806
Target:  5'- gCGCgcgCgguCGGGGCCC-GCGGcccACGCc -3'
miRNA:   3'- -GCGa--GaauGCUCCGGGaCGCUu--UGCG- -5'
6677 3' -53.9 NC_001847.1 + 78823 0.66 0.941336
Target:  5'- uCGCcUUUACGGccuucgcGGCCCgccGCGcGACGCc -3'
miRNA:   3'- -GCGaGAAUGCU-------CCGGGa--CGCuUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 82291 0.66 0.938949
Target:  5'- aCGC-CUUGCugGAGcugguguuaaccggcGCCC-GCGAAACGCc -3'
miRNA:   3'- -GCGaGAAUG--CUC---------------CGGGaCGCUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 117518 0.66 0.937487
Target:  5'- cCGCUCcacgcgcggcgacgACGAGGCCgUGCGcAACc- -3'
miRNA:   3'- -GCGAGaa------------UGCUCCGGgACGCuUUGcg -5'
6677 3' -53.9 NC_001847.1 + 111063 0.66 0.936995
Target:  5'- aGCUCUcACGAccGuGCCC-GUGAGaACGCu -3'
miRNA:   3'- gCGAGAaUGCU--C-CGGGaCGCUU-UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.