miRNA display CGI


Results 21 - 40 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6677 3' -53.9 NC_001847.1 + 56878 0.66 0.954779
Target:  5'- gCGCggccACG-GGCCCgccgGCGAcggcGACGCc -3'
miRNA:   3'- -GCGagaaUGCuCCGGGa---CGCU----UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 7264 0.66 0.954779
Target:  5'- gCGCg---GCGGGGgCaC-GCGAGACGCu -3'
miRNA:   3'- -GCGagaaUGCUCCgG-GaCGCUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 125193 0.66 0.954779
Target:  5'- uGCUCUUugGgGGGUCCgaGUcccAGACGCu -3'
miRNA:   3'- gCGAGAAugC-UCCGGGa-CGc--UUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 121862 0.66 0.954779
Target:  5'- uGCUUcaccgACGuGGCCCUG---GACGCg -3'
miRNA:   3'- gCGAGaa---UGCuCCGGGACgcuUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 106062 0.66 0.954779
Target:  5'- uGCUCgccgGCGgcagGGGCgCCgGCGccGCGCg -3'
miRNA:   3'- gCGAGaa--UGC----UCCG-GGaCGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 83013 0.66 0.954779
Target:  5'- uGCUgaUGCuGAGGCCCagcacuaccGCGGGcCGCg -3'
miRNA:   3'- gCGAgaAUG-CUCCGGGa--------CGCUUuGCG- -5'
6677 3' -53.9 NC_001847.1 + 113616 0.66 0.954381
Target:  5'- aGCUUggGCGcguuGGCCCgcgcgGCccccgccGAGGCGCg -3'
miRNA:   3'- gCGAGaaUGCu---CCGGGa----CG-------CUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 128147 0.66 0.951114
Target:  5'- cCGCUCgucGCGuuuuaucugcugggcGGCCCgccggGCgGAAGCGCc -3'
miRNA:   3'- -GCGAGaa-UGCu--------------CCGGGa----CG-CUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 40491 0.66 0.950695
Target:  5'- -cCUCUUGCugGAGG-CCUGCGAAAaaauUGCc -3'
miRNA:   3'- gcGAGAAUG--CUCCgGGACGCUUU----GCG- -5'
6677 3' -53.9 NC_001847.1 + 80096 0.66 0.950695
Target:  5'- cCGCgcg-ACGAacgcGGCcaCCUGCGcAAACGCg -3'
miRNA:   3'- -GCGagaaUGCU----CCG--GGACGC-UUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 101310 0.66 0.950695
Target:  5'- gCGCUC-UGCGc-GCCC-GCGucuGCGCa -3'
miRNA:   3'- -GCGAGaAUGCucCGGGaCGCuu-UGCG- -5'
6677 3' -53.9 NC_001847.1 + 32427 0.66 0.950695
Target:  5'- cCGCUUUUcgggGCGGuGGCCCagGCGcuGcCGCa -3'
miRNA:   3'- -GCGAGAA----UGCU-CCGGGa-CGCuuU-GCG- -5'
6677 3' -53.9 NC_001847.1 + 115565 0.66 0.950695
Target:  5'- aCGCUUaagUACG-GGCCgCgGCGAu-CGCg -3'
miRNA:   3'- -GCGAGa--AUGCuCCGG-GaCGCUuuGCG- -5'
6677 3' -53.9 NC_001847.1 + 54565 0.66 0.950273
Target:  5'- gCGCggaggACGAcGGCCCcGCGGgcugggcGGCGCu -3'
miRNA:   3'- -GCGagaa-UGCU-CCGGGaCGCU-------UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 13232 0.66 0.949849
Target:  5'- aGCUCcgcgauggccaGCGGGGCCaCgcggGCGGuuCGCa -3'
miRNA:   3'- gCGAGaa---------UGCUCCGG-Ga---CGCUuuGCG- -5'
6677 3' -53.9 NC_001847.1 + 42995 0.66 0.946372
Target:  5'- uCGCUgUcgGCG-GGCCCcGCGGAcgGCGg -3'
miRNA:   3'- -GCGAgAa-UGCuCCGGGaCGCUU--UGCg -5'
6677 3' -53.9 NC_001847.1 + 50534 0.66 0.946372
Target:  5'- cCGCUCgaagGCGAcgcagcGGCgCUGCuGGAcCGCg -3'
miRNA:   3'- -GCGAGaa--UGCU------CCGgGACG-CUUuGCG- -5'
6677 3' -53.9 NC_001847.1 + 115851 0.66 0.946372
Target:  5'- gCGCUCguuugUugGcGGCCCgccGCacAGACGCu -3'
miRNA:   3'- -GCGAGa----AugCuCCGGGa--CGc-UUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 13271 0.66 0.946372
Target:  5'- uGCUgacUGCGGugccGGCCCUGUGc-GCGCg -3'
miRNA:   3'- gCGAga-AUGCU----CCGGGACGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 87453 0.66 0.946372
Target:  5'- gCGCUCaac---GGCCCcGCGgcGCGCg -3'
miRNA:   3'- -GCGAGaaugcuCCGGGaCGCuuUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.